RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 DNASE1L2Q92874 299 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 MYO19Q96H55 970 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 TRIB3Q96RU7 358 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 DCSTAMPQ9H295 470 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 CD320Q9NPF0 282 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 PCDHB8Q9UN66 801 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 SNX6Q9UNH7 406 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 PCM1Q15154 2024 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 OTOFQ9HC10 1997 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 GLYATL1P3A0A0U1RQE8 302 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 ANTXRLA6NF34 631 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 WASHC1A8K0Z3 465 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 VNN2O95498 520 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 CYP11A1P05108 521 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 HOXC13P31276 330 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 BDKRB1P46663 353 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 RAB25P57735 213 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 IRF8Q02556 426 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 BCL2L1Q07817 233 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 CTF1Q16619 201 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 HECTD3Q5T447 861 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 WASH2PQ6VEQ5 465 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 CYP2U1Q7Z449 544 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 ZBTB2Q8N680 514 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 FBXO22Q8NEZ5 403 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 RELTQ969Z4 430 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 LGALS12Q96DT0 336 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 SAMD11Q96NU1 681 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 TMEFF2Q9UIK5 374 aaPredicted RBP8.4□□□□□ -1.06
USP40-203ENST00000427112 INTS6Q9UL03 887 aaKnown RBP8.4□□□□□ -1.06
USP40-203ENST00000427112 PCDHB7Q9Y5E2 793 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 PCDHGA10Q9Y5H3 936 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 PRR23AA6NEV1 266 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 CTDSP2O14595 271 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 PCDHGA12O60330 932 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 SEC14L2O76054 403 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 WISP3O95389 354 aaPredicted RBP8.4□□□□□ -1.07
USP40-203ENST00000427112 TGFB1P01137 390 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 OGNP20774 298 aaKnown RBP8.4□□□□□ -1.07
USP40-203ENST00000427112 CD97P48960 835 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 AKR1D1P51857 326 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 ARHGDIAP52565 204 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 COPZ1P61923 177 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 ZNF697Q5TEC3 545 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.4□□□□□ -1.07
USP40-203ENST00000427112 COLGALT2Q8IYK4 626 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 ARMC5Q96C12 935 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 ZNF382Q96SR6 550 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 PKP4Q99569 1192 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 RBM4BQ9BQ04 359 aaKnown RBP8.4□□□□□ -1.07
USP40-203ENST00000427112 RBM4Q9BWF3 364 aaKnown RBP8.4□□□□□ -1.07
USP40-203ENST00000427112 SCN3BQ9NY72 215 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 TBC1D14Q9P2M4 693 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 RAB23Q9ULC3 237 aa8.4□□□□□ -1.07
USP40-203ENST00000427112 PFDN6O15212 129 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 HYAL3O43820 417 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 AIREO43918 545 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 PCDH7O60245 1069 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 PRAMEF4O60810 478 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 DUSP11O75319 330 aaKnown RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 HOXD8P13378 290 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 ETFAP13804 333 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 SDC1P18827 310 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 ITGALP20701 1170 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CD70P32970 193 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 ST13P50502 369 aaKnown RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 CBLBQ13191 982 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 EIF4EBP2Q13542 120 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 KCNJ8Q15842 424 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 SLC14A2Q15849 920 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 PDCD4Q53EL6 469 aaKnown RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 PRAMEF9Q5VWM5 478 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 FAAH2Q6GMR7 532 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 NEK5Q6P3R8 708 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 STK40Q8N2I9 435 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 PDPRQ8NCN5 879 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CYB5D2Q8WUJ1 264 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CIDECQ96AQ7 238 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 FEVQ99581 238 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 P2RY13Q9BPV8 354 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 TCF25Q9BQ70 676 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 COPS4Q9BT78 406 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 HMG20AQ9NP66 347 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 THUMPD1Q9NXG2 353 aaKnown RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 ZIM2Q9NZV7 527 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 RTCAO00442 366 aaKnown RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 HIST1H2AGP0C0S8 130 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 ZNF24P17028 368 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 MSH3P20585 1137 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 HIST1H2ADP20671 130 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CCR7P32248 378 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 HOXD12P35452 270 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 ATP4BP51164 291 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 SPIBQ01892 262 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 NFATC2Q13469 925 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 GBX1Q14549 363 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 COX20Q5RI15 118 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 RSBN1Q5VWQ0 802 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 GTF2IRD2BQ6EKJ0 949 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 Q6ZVU0 165 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms