RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CACNA1HO95180 2353 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 PIPSLA2A3N6 862 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 ERICH4A6NGS2 130 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 PSMB5P28074 263 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 EPHA8P29322 1005 aaPredicted RBP16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 GRK3P35626 688 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 CCT8P50990 548 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 CCR8P51685 355 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 ABATP80404 500 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 TCF15Q12870 199 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 KIR2DS3Q14952 304 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 HLA-BQ31612 363 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 UGT3A2Q3SY77 523 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 C14orf28Q4W4Y0 310 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 ATP6AP1LQ52LC2 224 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 FRG2Q64ET8 278 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 MED27Q6P2C8 311 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 TRPM8Q7Z2W7 1104 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 MTDHQ86UE4 582 aaKnown RBP16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 ARL14Q8N4G2 192 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 FRG2BQ96QU4 278 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 OR52B2Q96RD2 323 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 SLC38A3Q99624 504 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 GMEB2Q9UKD1 530 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 CFAP54Q96N23 3096 aa16.52■□□□□ 0.23
CCDC28B-202ENST00000421922 A0A1B0GTQ1 180 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 ATP6AP2A0A1C7CYW4 349 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 OR6C74A6NCV1 312 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 RHPN2P1A8MT19 583 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 ATP6AP2O75787 350 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 WFS1O76024 890 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 KIAA0754O94854 1291 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 VARSP26640 1264 aaKnown RBP16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 CASP2P42575 452 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 FASLGP48023 281 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 HTR6P50406 440 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 ATXN3P54252 364 aaPredicted RBP16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 BNC1Q01954 994 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 PRDX1Q06830 199 aaKnown RBP16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 PCDH1Q08174 1060 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 BNIP3Q12983 259 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 DDX39BQ13838 428 aaKnown RBP16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 NR6A1Q15406 480 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 LSM12Q3MHD2 195 aaKnown RBP16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 CATSPEREQ5SY80 951 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 C6orf132Q5T0Z8 1188 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 C10orf62Q5T681 223 aaPredicted RBP16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 METTL21CQ5VZV1 264 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 ARL10Q8N8L6 244 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 ERP27Q96DN0 273 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 MTFMTQ96DP5 389 aaKnown RBP16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 MAELQ96JY0 434 aaKnown RBP16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 NRTNQ99748 197 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 DUSP23Q9BVJ7 150 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 ZMYND15Q9H091 742 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 GAREM1Q9H706 876 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 MRGBPQ9NV56 204 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 SH2B3Q9UQQ2 575 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 ENTPD2Q9Y5L3 495 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 PTGDR2Q9Y5Y4 395 aa16.51■□□□□ 0.23
CCDC28B-202ENST00000421922 ADAMTS9Q9P2N4 1935 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 KCNE1BA0A087WTH5 132 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 A0A1W2PPV9 198 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 CCT8L1PA6NM43 557 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 C2orf74A8MZ97 194 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 H0YIV9 168 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 FCHO1O14526 889 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 NOBOXO60393 691 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 EPN2O95208 641 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 SERPINA6P08185 405 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 AMD1P17707 334 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 LBPP18428 481 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 POLR2CP19387 275 aaPredicted RBP16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 HRH2P25021 359 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 MPLP40238 635 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 STX1BP61266 288 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 ZNF33BQ06732 778 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 NAA25Q14CX7 972 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 ABRAXAS2Q15018 415 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 SLC23A3Q6PIS1 610 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 RNF165Q6ZSG1 346 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 CCDC121Q6ZUS5 278 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 ZNF761Q86XN6 746 aaPredicted RBP16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 SFTPA2Q8IWL1 248 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 GBP7Q8N8V2 638 aaPredicted RBP16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 KYQ8NBH2 561 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 USP7Q93009 1102 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 WDR34Q96EX3 536 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 PPP3R2Q96LZ3 170 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 HBEGFQ99075 208 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 TUBB1Q9H4B7 451 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 UCK1Q9HA47 277 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 FSCN3Q9NQT6 498 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 GEMIN8Q9NWZ8 242 aaKnown RBP16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 G3BP2Q9UN86 482 aaKnown RBP16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 PCDHGA5Q9Y5G8 931 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 R4GN57 208 aa16.5■□□□□ 0.23
CCDC28B-202ENST00000421922 BTN3A3O00478 584 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 ARHGAP33O14559 1287 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 UBDO15205 165 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 356.3 ms