RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 GANABQ14697 944 aaKnown RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 MACC1Q6ZN28 852 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 ASZ1Q8WWH4 475 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 MACROD1Q9BQ69 325 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 CTPS2Q9NRF8 586 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 EPN2O95208 641 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 ADH1AP07327 375 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 FOXM1Q08050 763 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CNTN1Q12860 1018 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 LRRC26Q2I0M4 334 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 GPR33Q49SQ1 333 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 GALNT18Q6P9A2 607 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 ZNF852Q6ZMS4 543 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 GAB3Q8WWW8 586 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 KAT8Q9H7Z6 458 aaKnown RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 ERVK-11Q9UQG0 969 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 UPK1AO00322 258 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 NME6O75414 186 aaPredicted RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 VIPP01282 170 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CTSLP07711 333 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 PTNP21246 168 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 FUT4P22083 530 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 IGFBP5P24593 272 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 DCTP40126 519 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 MAD2L1Q13257 205 aaPredicted RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 CCNYL2Q5T2Q4 361 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 OLIG3Q7RTU3 272 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 SPRED1Q7Z699 444 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CACTIN-AS1Q8N1I8 211 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 RASGEF1AQ8N9B8 481 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CIDECQ96AQ7 238 aaPredicted RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 KCNC2Q96PR1 638 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 HEPHQ9BQS7 1158 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CHD9Q3L8U1 2897 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 ALPPL2P10696 532 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 ITGADQ13349 1161 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CDKN3Q16667 212 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 SYT16Q17RD7 645 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 ZBED5Q49AG3 693 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 FNDC3BQ53EP0 1204 aaKnown RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 GLMNQ92990 594 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 TRMT2BQ96GJ1 504 aaKnown RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 ATXN10Q9UBB4 475 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 DNMT3BQ9UBC3 853 aaKnown RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 SH2B3Q9UQQ2 575 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 LOC100130705A0A1B0GUX0 176 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CLTBP09497 229 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 VLDLRP98155 873 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 TMEM115Q12893 351 aaPredicted RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 MTA1Q13330 715 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CARTPTQ16568 116 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 AHSA2Q719I0 299 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 MFSD2AQ8NA29 543 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 ASB11Q8WXH4 323 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 CLMPQ9H6B4 373 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 VPS29Q9UBQ0 182 aa12.97□□□□□ -0.33
VPS54-203ENST00000409558 MRPS23Q9Y3D9 190 aaKnown RBP12.97□□□□□ -0.33
VPS54-203ENST00000409558 MYO10Q9HD67 2058 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 TRIM43BA6NCK2 446 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 H3BM21 787 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 BCKDKO14874 412 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 TPST2O60704 377 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 HSMCR30P0CW71 290 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 ST8SIA6P61647 398 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 RUNDC3AQ59EK9 446 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 KLHL35Q6PF15 583 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 PTRH1Q86Y79 214 aaKnown RBP12.96□□□□□ -0.33
VPS54-203ENST00000409558 MMAAQ8IVH4 418 aaKnown RBP12.96□□□□□ -0.33
VPS54-203ENST00000409558 ADHFE1Q8IWW8 467 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 NLGN4XQ8N0W4 816 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 BPIFB1Q8TDL5 484 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 POF1BQ8WVV4 589 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 NCSTNQ92542 709 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 NEIL2Q969S2 332 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 TRIM43Q96BQ3 446 aaPredicted RBP12.96□□□□□ -0.33
VPS54-203ENST00000409558 C1QTNF3Q9BXJ4 246 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 SPHK2Q9NRA0 654 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 THG1LQ9NWX6 298 aaKnown RBP12.96□□□□□ -0.33
VPS54-203ENST00000409558 DNAJB9Q9UBS3 223 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 FBXO10Q9UK96 956 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 SYNDIG1LA6NDD5 238 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 UMPSP11172 480 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 SLC6A11P48066 632 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 HTR3DQ70Z44 454 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 C12orf40Q86WS4 652 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 IGFLR1Q9H665 355 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 ERVK-18Q9QC07 812 aa12.96□□□□□ -0.33
VPS54-203ENST00000409558 GRXCR1A8MXD5 290 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 SOCS5O75159 536 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 ETFAP13804 333 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 SLC19A1P41440 591 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 CSNK1DP48730 415 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 ARHGDIAP52565 204 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 NAA20P61599 178 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 NFE2L1Q14494 772 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 ZNF540Q8NDQ6 660 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 HUS1BQ8NHY5 278 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 HM13Q8TCT9 377 aa12.96□□□□□ -0.34
VPS54-203ENST00000409558 GANCQ8TET4 914 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms