RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 UCN3Q969E3 161 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 TAMM41Q96BW9 452 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 TRMT2BQ96GJ1 504 aaKnown RBP7.12□□□□□ -1.27
SCN9A-202ENST00000409435 GPATCH1Q9BRR8 931 aaKnown RBP7.12□□□□□ -1.27
SCN9A-202ENST00000409435 SLC25A23Q9BV35 468 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 LRMDAQ9H2I8 198 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 TOR3AQ9H497 397 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 PCDH18Q9HCL0 1135 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 EXD2Q9NVH0 621 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 PCYOX1Q9UHG3 505 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 PCDHGA11Q9Y5H2 935 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 SNX10Q9Y5X0 201 aa7.12□□□□□ -1.27
SCN9A-202ENST00000409435 MARF1Q9Y4F3 1742 aaKnown RBP7.12□□□□□ -1.27
SCN9A-202ENST00000409435 M0R036 132 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ORC5O43913 435 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TRMUO75648 421 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 GABBR2O75899 941 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CYP11A1P05108 521 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 EPORP19235 508 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 PRKACBP22694 351 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 P2RY2P41231 377 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 OMPP47874 163 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 VSX2P58304 361 aaPredicted RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SCN1BQ07699 218 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 HNRNPA1L2Q32P51 320 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 LSM12Q3MHD2 195 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 LCN1P1Q5VSP4 162 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SYCE2Q6PIF2 218 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 FAM20CQ8IXL6 584 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SLC6A18Q96N87 628 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 AARSD1Q9BTE6 412 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CRB3Q9BUF7 120 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 IL25Q9H293 177 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CLK4Q9HAZ1 481 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 PADI1Q9ULC6 663 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SPIN1Q9Y657 262 aaPredicted RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF891A8MT65 544 aaPredicted RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 APOC4-APOC2K7ER74 178 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 DCLK1O15075 740 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 DPM1O60762 260 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 APOC2P02655 101 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CSN2P05814 226 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ICAM2P13598 275 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 MYL9P24844 172 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 RBL1P28749 1068 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 PTDSS1P48651 473 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TAF1AQ15573 450 aaPredicted RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CCNYL2Q5T2Q4 361 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 PHF13Q86YI8 300 aaPredicted RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 NAXDQ8IW45 347 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TMEM132CQ8N3T6 1108 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TFGQ92734 400 aaPredicted RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 HDAC10Q969S8 669 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 C9orf72Q96LT7 481 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TDRD1Q9BXT4 1180 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 AGXT2Q9BYV1 514 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 RETREG1Q9H6L5 497 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ATP13A2Q9NQ11 1180 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 RPL26L1Q9UNX3 145 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ISPDA4D126 451 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 AP3D1O14617 1153 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 PRRG2O14669 202 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ALOX15BO15296 676 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 IPO13O94829 963 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 OR6B1O95007 311 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CALCAP01258 141 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 PRH1P02810 166 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 HSD3B1P14060 373 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CBX5P45973 191 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 GSTM5P46439 218 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ACADVLP49748 655 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 AQP5P55064 265 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 YPEL5P62699 121 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF45Q02386 682 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 RING1Q06587 406 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 HYAL2Q12891 473 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 GRTP1Q5TC63 336 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 WDR93Q6P2C0 686 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TTLL10Q6ZVT0 673 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SNX20Q7Z614 316 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TCEAL3Q969E4 200 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TEFMQ96QE5 360 aaKnown RBP7.11□□□□□ -1.27
SCN9A-202ENST00000409435 FEM1AQ9BSK4 669 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SLC25A51Q9H1U9 297 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TOR4AQ9NXH8 423 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 MAT2BQ9NZL9 334 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CROTQ9UKG9 612 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 A0A087X1B8 175 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 C15orf38-AP3S2A0A0A6YYH1 394 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CDC7O00311 574 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 TNFSF14O43557 240 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 C6P13671 934 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 DRD4P21917 467 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 CLDN2P57739 230 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 MAMLD1Q13495 774 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 ST3GAL2Q16842 350 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 SYT13Q7L8C5 426 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 XYLT1Q86Y38 959 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 HPS6Q86YV9 775 aa7.11□□□□□ -1.27
SCN9A-202ENST00000409435 NETO2Q8NC67 525 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms