RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MBD1Q9UIS9 605 aaPredicted RBP12.33□□□□□ -0.44
SHMT1-205ENST00000395684 SNX6Q9UNH7 406 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 HTR3EA5X5Y0 456 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 H7C4K7 107 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 FPGTO14772 594 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 FKBP9O95302 570 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 GPX2P18283 190 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 EFNA1P20827 205 aaPredicted RBP12.33□□□□□ -0.44
SHMT1-205ENST00000395684 PRPH2P23942 346 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 OR1D2P34982 312 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 WNT3P56703 355 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 MVKQ03426 396 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 NPRL3Q12980 569 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 MTAPQ13126 283 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 SYT16Q17RD7 645 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 PROX2Q3B8N5 592 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 PLEKHG6Q3KR16 790 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 IQCCQ4KMZ1 466 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 NOXRED1Q6NXP6 359 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 ZNF783Q6ZMS7 281 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 ZNF621Q6ZSS3 439 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 ENTHD1Q8IYW4 607 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 PAF1Q8N7H5 531 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 DNASE1L2Q92874 299 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 THUMPD1Q9NXG2 353 aaKnown RBP12.33□□□□□ -0.44
SHMT1-205ENST00000395684 VPS4AQ9UN37 437 aa12.33□□□□□ -0.44
SHMT1-205ENST00000395684 FAM32AQ9Y421 112 aaKnown RBP12.33□□□□□ -0.44
SHMT1-205ENST00000395684 EFCAB9A8MZ26 197 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 YY2O15391 372 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 KDM1AO60341 852 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 GALTP07902 379 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 SPAM1P38567 509 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 LIPAP38571 399 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 B4GALNT1Q00973 533 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 BCL2L1Q07817 233 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 FADDQ13158 208 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 UGT8Q16880 541 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 DUOXA1Q1HG43 343 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 PTCHD3Q3KNS1 767 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 GGTA1PQ4G0N0 100 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 PRSS36Q5K4E3 855 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 LYPLAL1Q5VWZ2 237 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 PDE12Q6L8Q7 609 aaKnown RBP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 FAHD1Q6P587 224 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 Q6ZPB1 254 aaPredicted RBP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 UBE2R2Q712K3 238 aaPredicted RBP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 CBLL1Q75N03 491 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 PSMA8Q8TAA3 256 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 ZHX1-C8orf76Q96EF9 292 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 ZBTB20Q9HC78 741 aaPredicted RBP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 CCNB1IP1Q9NPC3 277 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 KCTD5Q9NXV2 234 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 TRPM5Q9NZQ8 1165 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 KIF17Q9P2E2 1029 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 RPS6KA6Q9UK32 745 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 CLDN24A6NM45 220 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 AGAP14A8MT82 685 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 E9PQ18 207 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 AOAHP28039 575 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 CD40LGP29965 261 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 C21orf33P30042 268 aaPredicted RBP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 HOXD12P35452 270 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 TRPC1P48995 793 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 PPP5CP53041 499 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 CRYBA2P53672 197 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 BOP1Q14137 746 aaKnown RBP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 GPR33Q49SQ1 333 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 EIF3MQ7L2H7 374 aaKnown RBP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 PLD3Q8IV08 490 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 CLECL1Q8IZS7 167 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 OVCA2Q8WZ82 227 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 NELL1Q92832 810 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 PITX2Q99697 317 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 KIAA1522Q9P206 1035 aaPredicted RBP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.32□□□□□ -0.44
SHMT1-205ENST00000395684 SLC22A14Q9Y267 594 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 TMED5Q9Y3A6 229 aa12.32□□□□□ -0.44
SHMT1-205ENST00000395684 NUDT7P0C024 238 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 CST5P28325 142 aaPredicted RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 EIF2DP41214 584 aaKnown RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 NSG1P42857 185 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 TUFMP49411 452 aaKnown RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 ALDH7A1P49419 539 aaKnown RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 HSPA14Q0VDF9 509 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 SLC13A2Q13183 592 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 CAMK2GQ13555 558 aaPredicted RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 SF1Q15637 639 aaKnown RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 UBE2UQ5VVX9 321 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 RFLNAQ6ZTI6 216 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 TPGS1Q6ZTW0 290 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 LRRC70Q7Z2Q7 622 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 GPR155Q7Z3F1 870 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 FAM9CQ8IZT9 166 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 L3MBTL4Q8NA19 623 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 PCSK9Q8NBP7 692 aaKnown RBP12.31□□□□□ -0.44
SHMT1-205ENST00000395684 MCFD2Q8NI22 146 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 DCSTAMPQ9H295 470 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 REEP1Q9H902 201 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 STOML2Q9UJZ1 356 aa12.31□□□□□ -0.44
SHMT1-205ENST00000395684 PCDHB7Q9Y5E2 793 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms