RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 EFCAB9A8MZ26 197 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 H7C4K7 107 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 DLGAP3O95886 979 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 UGT2B4P06133 528 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 EPORP19235 508 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 KRT20P35900 424 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 SPAM1P38567 509 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 ALDH7A1P49419 539 aaKnown RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 NKX2-5P52952 324 aaPredicted RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 GABARAPL2P60520 117 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 CAP1Q01518 475 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 ABHD18Q0P651 414 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 INAVAQ3KP66 663 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 LRRC66Q68CR7 880 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 NOXRED1Q6NXP6 359 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 FAM180BQ6P0A1 224 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 TRIM46Q7Z4K8 759 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 TMCO2Q7Z6W1 182 aaPredicted RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 DEFB128Q7Z7B8 93 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 NXPE1Q8N323 547 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 SCLYQ96I15 445 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 CASD1Q96PB1 797 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 COPS8Q99627 209 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 WDR12Q9GZL7 423 aaKnown RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 THUMPD1Q9NXG2 353 aaKnown RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 TSC22D4Q9Y3Q8 395 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 GRXCR2A6NFK2 248 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 TRIM64BA6NI03 449 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 CCDC159P0C7I6 412 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 KDELR2P33947 212 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 CTSOP43234 321 aaPredicted RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 TPTEP56180 551 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 IRF8Q02556 426 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 GSTM4Q03013 218 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 SHQ1Q6PI26 577 aaKnown RBP11.78□□□□□ -0.52
CLIP3-201ENST00000360535 NELL1Q92832 810 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 ZDHHC6Q9H6R6 413 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 TRPS1Q9UHF7 1281 aa11.78□□□□□ -0.52
CLIP3-201ENST00000360535 COL4A4P53420 1690 aaPredicted RBP11.77□□□□□ -0.52
CLIP3-201ENST00000360535 CCNDBP1O95273 360 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 LAMP1P11279 417 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 GTF2E2P29084 291 aaKnown RBP11.77□□□□□ -0.53
CLIP3-201ENST00000360535 NRIP1P48552 1158 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 TUFMP49411 452 aaKnown RBP11.77□□□□□ -0.53
CLIP3-201ENST00000360535 TP53BP2Q13625 1128 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 XKR6Q5GH73 641 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 NTMT1Q9BV86 223 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 SMG9Q9H0W8 520 aaKnown RBP11.77□□□□□ -0.53
CLIP3-201ENST00000360535 STARD7Q9NQZ5 370 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 SLCO3A1Q9UIG8 710 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 ERVK-11Q9UQG0 969 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 MAGEB17A8MXT2 336 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 PCDHGA12O60330 932 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 FZD6O60353 706 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 JRKO75564 520 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 CKMP06732 381 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 ACPPP15309 386 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 HMGA1P17096 107 aaKnown RBP11.77□□□□□ -0.53
CLIP3-201ENST00000360535 PBLDP30039 288 aaPredicted RBP11.77□□□□□ -0.53
CLIP3-201ENST00000360535 SLC35A2P78381 396 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 OXA1LQ15070 435 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 HKDC1Q2TB90 917 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 RFX4Q33E94 735 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 CLIP4Q8N3C7 705 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 SCAMP4Q969E2 229 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 PLD4Q96BZ4 506 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 P2RY13Q9BPV8 354 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 ACOT13Q9NPJ3 140 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 BTBD3Q9Y2F9 522 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 PLXNA3P51805 1871 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 PLXNA4Q9HCM2 1894 aa11.77□□□□□ -0.53
CLIP3-201ENST00000360535 LINC00854A0A1B0GVQ3 168 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 SAP18O00422 153 aaKnown RBP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 SLC22A1O15245 554 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 SLC16A6O15403 523 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 PRAMEF4O60810 478 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 DNTTP04053 509 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 RRM2P31350 389 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 DNAJA1P31689 397 aaKnown RBP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 RYKP34925 604 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CCL23P55773 120 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CYP4F8P98187 520 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 VMACQ2NL98 169 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 C5orf22Q49AR2 442 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 PRSS36Q5K4E3 855 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 PRAMEF9Q5VWM5 478 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 RETSATQ6NUM9 610 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CHPFQ8IZ52 775 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 POC5Q8NA72 575 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 DNASE1L2Q92874 299 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 USP7Q93009 1102 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CDK5RAP1Q96SZ6 601 aaKnown RBP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 DCSTAMPQ9H295 470 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 PALMDQ9NP74 551 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 IL1RAPQ9NPH3 570 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 AKIP1Q9NQ31 210 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 KCTD5Q9NXV2 234 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CAB39Q9Y376 341 aaPredicted RBP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 SNX8Q9Y5X2 465 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 DOCK6Q96HP0 2047 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms