RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HDAC3O15379 428 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 HCRTR2O43614 444 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 RNGTTO60942 597 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 IFNGP01579 166 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 AHSGP02765 367 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FABP3P05413 133 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ECHS1P30084 290 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 MNX1P50219 401 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 RIPK1Q13546 671 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 C5orf22Q49AR2 442 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 LRRTM4Q86VH4 590 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 PHF13Q86YI8 300 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CASTOR1Q8WTX7 329 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CDKN2AIPNLQ96HQ2 116 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 SLC45A3Q96JT2 553 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ZNF670Q9BS34 389 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 NMUR2Q9GZQ4 415 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 GNEQ9Y223 722 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 MAP3K8P41279 467 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CDH15P55291 814 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 THOC6Q86W42 341 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 GLIS1Q8NBF1 620 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 TBC1D15Q8TC07 691 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ZSWIM3Q96MP5 696 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 UCK2Q9BZX2 261 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 USP29Q9HBJ7 922 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 PIGVQ9NUD9 493 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 DKK3Q9UBP4 350 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 A0A0G2JLL6 359 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 K7EPI3 171 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 GJB3O75712 270 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 LCA5LO95447 670 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ECDO95905 644 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ALPPP05187 535 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 POU2F2P09086 479 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 SPARCP09486 303 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 COL6A2P12110 1019 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 UFM1P61960 85 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 PRRT2Q7Z6L0 340 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 RNF175Q8N4F7 328 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CPSF7Q8N684 471 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.16□□□□□ -1.269e-7■■□□□ 14.2
VPS13A-202ENST00000357409 SLC13A3Q8WWT9 602 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 APBB2Q92870 758 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FUCA2Q9BTY2 467 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 C1QTNF6Q9BXI9 259 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 GBA3Q9H227 469 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 COQ10BQ9H8M1 238 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 KCNK13Q9HB14 408 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 VDAC3Q9Y277 283 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 TULP4Q9NRJ4 1543 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ISPDA4D126 451 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 HSPB6O14558 160 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 NOL4O94818 638 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 SNAI1O95863 264 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FGF1P05230 155 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 HCKP08631 526 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 IFI30P13284 250 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ATP1B2P14415 290 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CKMT2P17540 419 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CDK9P50750 372 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CRB2Q5IJ48 1285 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 LCLAT1Q6UWP7 414 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 TMPPEQ6ZT21 453 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 SPERTQ8NA61 448 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 OR9I1Q8NGQ6 314 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 RP9Q8TA86 221 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 USP31Q70CQ4 1352 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 OR3A3P47888 321 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 OR3A2P47893 321 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 IDH3AP50213 366 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CORO7P57737 925 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ENPP2Q13822 863 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 TAF1AQ15573 450 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 GCNT6Q5T4J0 391 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 AAGABQ6PD74 315 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ARL9Q6T311 187 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 SDHAF3Q9NRP4 125 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 SERINC1Q9NRX5 453 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 HS3ST4Q9Y661 456 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 AP4B1Q9Y6B7 739 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 E7ENX8 843 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 SOCS2O14508 198 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 SMCO1Q147U7 214 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ATXN7L3Q14CW9 347 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CELF5Q8N6W0 485 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 OR6N2Q8NGY6 317 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 TRIM2Q9C040 744 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 B4GALT6Q9UBX8 382 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ITGB1BP2Q9UKP3 347 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 INSL5Q9Y5Q6 135 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FAM170BA6NMN3 283 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FAM72CH0Y354 149 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 PROM1O43490 865 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CBFA2T3O75081 653 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ADSSP30520 456 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FXYD6P3P58550 94 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 MYLK3Q32MK0 819 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 PTCHD3Q3KNS1 767 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FAM72AQ5TYM5 149 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms