RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 SCN2AQ99250 2005 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 PIPSLA2A3N6 862 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 H3BMH7 237 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 HAT1O14929 419 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 TNFSF14O43557 240 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 SUPT7LO94864 414 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 KCNK5O95279 499 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ETHE1O95571 254 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 GSTA1P08263 222 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 RPS17P08708 135 aaKnown RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 ANXA5P08758 320 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 RBP1P09455 135 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 HIST1H2AGP0C0S8 130 aaPredicted RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 FTH1P19P0C7X4 201 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CDH1P12830 882 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 AMD1P17707 334 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ITIH1P19827 911 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 HIST1H2ADP20671 130 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CYP2A7P20853 494 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ALDH18A1P54886 795 aaKnown RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 HERVK_113P63132 956 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 PPP2R2AP63151 447 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 TRAF3Q13114 568 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 DOC2AQ14183 400 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ANKS6Q68DC2 871 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CLEC6AQ6EIG7 209 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 SPESP1Q6UW49 350 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 SLCO4C1Q6ZQN7 724 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 FRA10AC1Q70Z53 315 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ARHGAP22Q7Z5H3 698 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 SYVN1Q86TM6 617 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 FAM129CQ86XR2 697 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 HMGCLL1Q8TB92 370 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 MTFMTQ96DP5 389 aaKnown RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 SLC45A3Q96JT2 553 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 HIST1H2AHQ96KK5 128 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 HIST1H2AJQ99878 128 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 H2AFJQ9BTM1 129 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ERVK-6Q9BXR3 956 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 TUBB1Q9H4B7 451 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 IPPKQ9H8X2 491 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 FTSJ1Q9UET6 329 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 GIMAP2Q9UG22 337 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 POLG2Q9UHN1 485 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 MRPS2Q9Y399 296 aaKnown RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 PTPRBP23467 1997 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 LILRA5A6NI73 299 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 HMGB1P1B2RPK0 211 aaPredicted RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 NR1D1P20393 614 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ATP5F1P24539 256 aaPredicted RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 ETV5P41161 510 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 GABRA4P48169 554 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 HTR6P50406 440 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 AP1S2P56377 157 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CSNK1G2P78368 415 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CDKL1Q00532 357 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CLCQ05315 142 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ZFP36L1Q07352 338 aaKnown RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 BST1Q10588 318 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 SP140Q13342 867 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 PCBP2Q15366 365 aaKnown RBP eCLIP3.87□□□□□ -1.79
LIG4-201ENST00000356922 CHI3L2Q15782 390 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 TSNAXIP1Q2TAA8 658 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 UGT3A2Q3SY77 523 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 THEMIS2Q5TEJ8 643 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 FAM69BQ5VUD6 431 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ICE2Q659A1 982 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 SULT1C3Q6IMI6 304 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ARMC6Q6NXE6 501 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CHCHD4Q8N4Q1 142 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 AMER3Q8N944 861 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CABS1Q96KC9 395 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 SSU72Q9NP77 194 aaKnown RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 GEMIN8Q9NWZ8 242 aaKnown RBP3.87□□□□□ -1.79
LIG4-201ENST00000356922 PDP2Q9P2J9 529 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 POMT2Q9UKY4 750 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 CFAP46Q8IYW2 2715 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 ZFYVE26Q68DK2 2539 aa3.87□□□□□ -1.79
LIG4-201ENST00000356922 KCNE1BA0A087WTH5 132 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 WASHC1A8K0Z3 465 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 D6RAR5 112 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 FFAR3O14843 346 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SLC30A4O14863 429 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 YKT6O15498 198 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 GPR42O15529 346 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 P2RX6O15547 441 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ATP8B1O43520 1251 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 KLHL18O94889 574 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 OR4F21O95013 312 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CPNE6O95741 557 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ENO2P09104 434 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 MYL2P10916 166 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 OAS2P29728 719 aaKnown RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 GPR3P46089 330 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ARL4DP49703 201 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 NOVA1P51513 510 aaKnown RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 LIMK1P53667 647 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 NFKB2Q00653 900 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 HYAL2Q12891 473 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 GTF2H2Q13888 395 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms