RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CLDN9O95484 217 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 NPPAP01160 153 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 EIF2S1P05198 315 aaKnown RBP12.44□□□□□ -0.42
CLK3-201ENST00000345005 ALDOCP09972 364 aaKnown RBP12.44□□□□□ -0.42
CLK3-201ENST00000345005 ZNF24P17028 368 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 GRIA3P42263 894 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 SLC7A2P52569 658 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 TMBIM6P55061 237 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 CDK3Q00526 305 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 C16orf72Q14CZ0 275 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 RPS6KA2Q15349 733 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 KIF19Q2TAC6 998 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 FAM219BQ5XKK7 198 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 IL27RAQ6UWB1 636 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 PRR23BQ6ZRT6 265 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 RNF165Q6ZSG1 346 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 MIER2Q8N344 545 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 DHRSXQ8N5I4 330 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 LILRA3Q8N6C8 439 aaPredicted RBP12.44□□□□□ -0.42
CLK3-201ENST00000345005 DCBLD1Q8N8Z6 715 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 SNX31Q8N9S9 440 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 OR2L2Q8NH16 312 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 CANT1Q8WVQ1 401 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 TMIGD2Q96BF3 282 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 C12orf43Q96C57 262 aaKnown RBP12.44□□□□□ -0.42
CLK3-201ENST00000345005 MAGED4Q96JG8 741 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 MAGEB10Q96LZ2 347 aaPredicted RBP12.44□□□□□ -0.42
CLK3-201ENST00000345005 C1QTNF7Q9BXJ2 289 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 C1QTNF2Q9BXJ5 285 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 TEX101Q9BY14 249 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 SLC29A3Q9BZD2 475 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 ZFR2Q9UPR6 939 aaKnown RBP12.44□□□□□ -0.42
CLK3-201ENST00000345005 B3GNT3Q9Y2A9 372 aa12.44□□□□□ -0.42
CLK3-201ENST00000345005 DNMT3AQ9Y6K1 912 aaPredicted RBP12.44□□□□□ -0.42
CLK3-201ENST00000345005 VCANP13611 3396 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 hCG_2014768A0A024R1R8 64 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 MGAT4DA6NG13 374 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 LOC730098B7Z3J9 87 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 GPR89AB7ZAQ6 455 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 CLOCKO15516 846 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 TIPRLO75663 272 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 GPR89BP0CG08 455 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 CD1EP15812 388 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 COL9A1P20849 921 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 GPX3P22352 226 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 PDHA2P29803 388 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 CAPGP40121 348 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 ATXN3P54252 364 aaPredicted RBP12.43□□□□□ -0.42
CLK3-201ENST00000345005 C21orf59P57076 290 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 ERVK-8P63133 956 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 PTCHD3Q3KNS1 767 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 FBXO43Q4G163 708 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 ATP6AP1LQ52LC2 224 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 ZNF547Q8IVP9 402 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 CBR4Q8N4T8 237 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 FBXO15Q8NCQ5 510 aaPredicted RBP12.43□□□□□ -0.42
CLK3-201ENST00000345005 PAPD5Q8NDF8 572 aaKnown RBP12.43□□□□□ -0.42
CLK3-201ENST00000345005 OR14C36Q8NHC7 312 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 MSANTD3Q96H12 275 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 NPLQ9BXD5 320 aaPredicted RBP12.43□□□□□ -0.42
CLK3-201ENST00000345005 DPEP2Q9H4A9 486 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 RMI1Q9H9A7 625 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 DNAJC11Q9NVH1 559 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 SPATA7Q9P0W8 599 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 GULP1Q9UBP9 304 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 FZD4Q9ULV1 537 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 NCKAP1Q9Y2A7 1128 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 TMEM98Q9Y2Y6 226 aa12.43□□□□□ -0.42
CLK3-201ENST00000345005 SPTBN5Q9NRC6 3674 aaKnown RBP12.43□□□□□ -0.42
CLK3-201ENST00000345005 ZNF839A8K0R7 811 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 SLC28A1O00337 649 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 SOCS2O14508 198 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 ULK1O75385 1050 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 DNAJB5O75953 348 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 PAK4O96013 591 aaPredicted RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 JUNBP17275 347 aaPredicted RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 TRIM23P36406 574 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 RPA4Q13156 261 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 ZXDCQ2QGD7 858 aaPredicted RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 EOGTQ5NDL2 527 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 CCNYL2Q5T2Q4 361 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 NEK5Q6P3R8 708 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 CRTC3Q6UUV7 619 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 SCIMPQ6UWF3 145 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 CYP2R1Q6VVX0 501 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 LINC00299Q6ZSB3 139 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 USP30Q70CQ3 517 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 PROSER1Q86XN7 944 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 HMGCLL1Q8TB92 370 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 POP5Q969H6 163 aaKnown RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 SIPA1Q96FS4 1042 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 PHF7Q9BWX1 381 aaPredicted RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 SLC17A9Q9BYT1 436 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 UBE2ZQ9H832 354 aaPredicted RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 ACTR8Q9H981 624 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 SDR39U1Q9NRG7 319 aaPredicted RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 PHPT1Q9NRX4 125 aaPredicted RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 SMPD3Q9NY59 655 aaPredicted RBP12.42□□□□□ -0.42
CLK3-201ENST00000345005 GIMAP2Q9UG22 337 aa12.42□□□□□ -0.42
CLK3-201ENST00000345005 MYOCOSA0A1B0GUC4 107 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms