RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PADI4Q9UM07 663 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 SH2B3Q9UQQ2 575 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 DGKBQ9Y6T7 804 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ALPK3Q96L96 1907 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 PRRT4C9JH25 899 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 MAN1A2O60476 641 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ATG13O75143 517 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 FKBP9O95302 570 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 CYP17A1P05093 508 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 NUDT7P0C024 238 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 MPC1LP0DKB6 136 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 BMPR1AP36894 532 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 DYNC1I2Q13409 638 aaKnown RBP10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ADRM1Q16186 407 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 FXNQ16595 210 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 FNDC3BQ53EP0 1204 aaKnown RBP10.02□□□□□ -0.81
LIMA1-201ENST00000341247 C1orf53Q5VUE5 145 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 AP1ARQ63HQ0 302 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 TMEM26Q6ZUK4 368 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 FKBP9P1Q75LS8 142 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 TCAIMQ8N3R3 496 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 L3MBTL4Q8NA19 623 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 MAL2Q969L2 176 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 TPD52L3Q96J77 140 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 GORASP2Q9H8Y8 452 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 VNN3Q9NY84 501 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 MAFFQ9ULX9 164 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 CFAP20Q9Y6A4 193 aaKnown RBP10.02□□□□□ -0.81
LIMA1-201ENST00000341247 PTGES3LE9PB15 166 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 CLIC1O00299 241 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 ERN1O75460 977 aaKnown RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 CATP04040 527 aaKnown RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 PRPS2P11908 318 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 GSSP48637 474 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 ADARB1P78563 741 aaKnown RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 ZDHHC20Q5W0Z9 365 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 TRAM1L1Q8N609 369 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 SNX19Q92543 992 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 CLP1Q92989 425 aaKnown RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 NEIL2Q969S2 332 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 IL17FQ96PD4 163 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 ZSCAN5AQ9BUG6 496 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 CXorf21Q9HAI6 301 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 SAGE1Q9NXZ1 904 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 TBC1D14Q9P2M4 693 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 DNAJB9Q9UBS3 223 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 A0A096LPI6 279 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 GRXCR2A6NFK2 248 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 GRXCR1A8MXD5 290 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 EVPLLA8MZ36 301 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 H3BM21 787 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 WNT9AO14904 365 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 LZTS3O60299 673 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 EFCAB14O75071 495 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 ASLP04424 464 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 ADH5P11766 374 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 AGXTP21549 392 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 IMPA1P29218 277 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 AP1S2P56377 157 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 RPS13P62277 151 aaKnown RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 KCNAB2Q13303 367 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 COL9A2Q14055 689 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 GBX1Q14549 363 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 KCTD21Q4G0X4 260 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 ERAP2Q6P179 960 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 NELL1Q92832 810 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 NPLQ9BXD5 320 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 DCAF13Q9NV06 445 aaKnown RBP10.01□□□□□ -0.81
LIMA1-201ENST00000341247 ABCG2Q9UNQ0 655 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 TMEM98Q9Y2Y6 226 aa10.01□□□□□ -0.81
LIMA1-201ENST00000341247 TRBV5-3A0A0A0MS03 114 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 SLCO2B1O94956 709 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 SCELO95171 688 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 TGFB1P01137 390 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 GSTM1P09488 218 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 ANXA4P09525 319 aaPredicted RBP10□□□□□ -0.81
LIMA1-201ENST00000341247 MAPK1P28482 360 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 WASP42768 502 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 STT3AP46977 705 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 GSTM4Q03013 218 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 SIM2Q14190 667 aaPredicted RBP10□□□□□ -0.81
LIMA1-201ENST00000341247 RAB39AQ14964 217 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 PRR23BQ6ZRT6 265 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 DDHD1Q8NEL9 900 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 OR4K1Q8NGD4 311 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 HUS1BQ8NHY5 278 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 C12orf43Q96C57 262 aaKnown RBP10□□□□□ -0.81
LIMA1-201ENST00000341247 AMBRA1Q9C0C7 1298 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 CCDC90BQ9GZT6 254 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 AASDHPPTQ9NRN7 309 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 PCDHGA8Q9Y5G5 932 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 MTCL1Q9Y4B5 1905 aaKnown RBP10□□□□□ -0.81
LIMA1-201ENST00000341247 FRYLO94915 3013 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 RECQL5O94762 991 aaPredicted RBP10□□□□□ -0.81
LIMA1-201ENST00000341247 BMP10O95393 424 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 PTPN6P29350 595 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 MMP12P39900 470 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 GPR1P46091 355 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 ZDHHC21Q8IVQ6 265 aa10□□□□□ -0.81
LIMA1-201ENST00000341247 PARP8Q8N3A8 854 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms