RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PTCHD3Q3KNS1 767 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 ZC3H12BQ5HYM0 836 aaKnown RBP15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 PRAMEF17Q5VTA0 474 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 LRRC69Q6ZNQ3 347 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 PAQR7Q86WK9 346 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 MCATQ8IVS2 390 aaKnown RBP15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 GPR135Q8IZ08 494 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 PLD6Q8N2A8 252 aaKnown RBP15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 TCAIMQ8N3R3 496 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 GALNT6Q8NCL4 622 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 OR2W6PQ8NHA6 318 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 TSNARE1Q96NA8 513 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 FCRL4Q96PJ5 515 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 ATOH8Q96SQ7 321 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 HAUS8Q9BT25 410 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 SPRTNQ9H040 489 aaPredicted RBP15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 PPCSQ9HAB8 311 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 PCMTD2Q9NV79 361 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 NUDT4Q9NZJ9 180 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 PILRAQ9UKJ1 303 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 SNX7Q9UNH6 387 aa15.25■□□□□ 0.03
CCDC28A-201ENST00000332797 TPRP12270 2363 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 MAP1BP46821 2468 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 A0A0J9YVX5 310 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 SRRM3A6NNA2 597 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 H7BY64 318 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 UBXN8O00124 270 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 CPNE3O75131 537 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 CDH1P12830 882 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 NPPBP16860 134 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 ATP1A2P50993 1020 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 FBXO48Q5FWF7 155 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 SULT1C3Q6IMI6 304 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 ZNF425Q6IV72 752 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 TIFABQ6ZNK6 161 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 RNF44Q7L0R7 432 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 TIPARPQ7Z3E1 657 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 THOC6Q86W42 341 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 DTX1Q86Y01 620 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 SPACA3Q8IXA5 215 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 NLGN4XQ8N0W4 816 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 PDPRQ8NCN5 879 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 NLGN4YQ8NFZ3 816 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 CABS1Q96KC9 395 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 SCYL1Q96KG9 808 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 PRAP1Q96NZ9 151 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 GPR78Q96P69 363 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 OR4K3Q96R72 315 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 ZFYVE21Q9BQ24 234 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 SELENOSQ9BQE4 189 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 TMEM79Q9BSE2 394 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 DPH1Q9BZG8 443 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 SPRY4Q9C004 299 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 SLC7A5P2Q9GIP4 190 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 RRAGDQ9NQL2 400 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 ZNF358Q9NW07 568 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 DYRK1BQ9Y463 629 aa15.24■□□□□ 0.03
CCDC28A-201ENST00000332797 PCM1Q15154 2024 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 ANKRD11Q6UB99 2663 aaPredicted RBP15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 SYCE1LA8MT33 242 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 HAT1O14929 419 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 TAPBPO15533 448 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 WDR47O94967 919 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 NUDT17P0C025 328 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 HRH2P25021 359 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 GDF5P43026 501 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 SLC6A12P48065 614 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 VSX2P58304 361 aaPredicted RBP15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 IFFO1Q0D2I5 559 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 TSNAXIP1Q2TAA8 658 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 CDKL4Q5MAI5 379 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 FRMPD2BQ6IN97 320 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 C6orf15Q6UXA7 325 aaPredicted RBP15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 TDRPQ86YL5 185 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 PLD3Q8IV08 490 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 CACNA2D3Q8IZS8 1091 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 ZNF655Q8N720 491 aaPredicted RBP15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 RHEBL1Q8TAI7 183 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 NKD1Q969G9 470 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 CNOT10Q9H9A5 744 aaKnown RBP15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 ACTR5Q9H9F9 607 aaPredicted RBP15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 TMEM184CQ9NVA4 438 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 SLC22A14Q9Y267 594 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 PCDHB3Q9Y5E6 796 aa15.23■□□□□ 0.03
CCDC28A-201ENST00000332797 CCDC189A1A4V9 331 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 H3BMH7 237 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 ZSCAN9O15535 394 aaPredicted RBP15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 ZNF749O43361 778 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 IPO13O94829 963 aaKnown RBP15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 COL6A2P12110 1019 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 EZRP15311 586 aaKnown RBP15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 ITPKBP27987 946 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 HSPA7P48741 367 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 COL9A2Q14055 689 aaPredicted RBP15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 TECRLQ5HYJ1 363 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 FBXO42Q6P3S6 717 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 VASH2Q86V25 355 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 CNPY4Q8N129 248 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 MREGQ8N565 214 aa15.22■□□□□ 0.03
CCDC28A-201ENST00000332797 ESX1Q8N693 406 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms