RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 IRGMA1A4Y4 181 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 PRKAR1AP10644 381 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 DCTP40126 519 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 RPL34P49207 117 aaKnown RBP14.34□□□□□ -0.11
TCOF1-201ENST00000323668 MAPK12P53778 367 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 CYP4F8P98187 520 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 PCBP2Q15366 365 aaKnown RBP eCLIP14.34□□□□□ -0.11
TCOF1-201ENST00000323668 TMEM236Q5W0B7 351 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 PIANPQ8IYJ0 282 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 C2orf73Q8N5S3 287 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-201ENST00000323668 CD200R1Q8TD46 325 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 MGME1Q9BQP7 344 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 ABCB8Q9NUT2 735 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 VAPAQ9P0L0 249 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 A0A1W2PRB8 838 aa14.33□□□□□ -0.11
TCOF1-201ENST00000323668 BCAS1O75363 584 aaPredicted RBP14.33□□□□□ -0.11
TCOF1-201ENST00000323668 ALDH3B2P48448 385 aa14.33□□□□□ -0.11
TCOF1-201ENST00000323668 SLC11A1P49279 550 aa14.33□□□□□ -0.11
TCOF1-201ENST00000323668 CLDN8P56748 225 aa14.33□□□□□ -0.11
TCOF1-201ENST00000323668 CACUL1Q86Y37 369 aa14.33□□□□□ -0.11
TCOF1-201ENST00000323668 CCDC177Q9NQR7 707 aaPredicted RBP14.33□□□□□ -0.11
TCOF1-201ENST00000323668 NECTIN3Q9NQS3 549 aa14.33□□□□□ -0.11
TCOF1-201ENST00000323668 SNTG1Q9NSN8 517 aa14.33□□□□□ -0.11
TCOF1-201ENST00000323668 YIPF1Q9Y548 306 aa14.33□□□□□ -0.11
TCOF1-201ENST00000323668 HEMK1Q9Y5R4 338 aaPredicted RBP14.33□□□□□ -0.11
TCOF1-201ENST00000323668 AP3D1O14617 1153 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 EFCAB14O75071 495 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 C4BPBP20851 252 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 SSR2P43308 183 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 RPP38P78345 283 aaKnown RBP14.33□□□□□ -0.12
TCOF1-201ENST00000323668 BNC1Q01954 994 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 GANABQ14697 944 aaKnown RBP14.33□□□□□ -0.12
TCOF1-201ENST00000323668 NCCRP1Q6ZVX7 275 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-201ENST00000323668 USP30Q70CQ3 517 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 C16orf62Q7Z3J2 963 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 PHYKPLQ8IUZ5 450 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 CXorf40AQ8TE69 158 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 SUSD6Q92537 303 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 COL26A1Q96A83 441 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 IL4I1Q96RQ9 567 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 HEPHQ9BQS7 1158 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 SLC35A5Q9BS91 424 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 TMEM39AQ9NV64 488 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 ARNTLO00327 626 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 UBFD1O14562 309 aaKnown RBP14.33□□□□□ -0.12
TCOF1-201ENST00000323668 SLC30A4O14863 429 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 ACOX3O15254 700 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 SNX4O95219 450 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 GSRP00390 522 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 C1QAP02745 245 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 ADH1AP07327 375 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 C18orf21Q32NC0 220 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-201ENST00000323668 CYBRD1Q53TN4 286 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 PROKR1Q8TCW9 393 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 FRS2Q8WU20 508 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 RASSF5Q8WWW0 418 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 MCMBPQ9BTE3 642 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 POLR2J3Q9H1A7 115 aaKnown RBP14.33□□□□□ -0.12
TCOF1-201ENST00000323668 ABCB9Q9NP78 766 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 PAK1IP1Q9NWT1 392 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-201ENST00000323668 SLAMF8Q9P0V8 285 aa14.33□□□□□ -0.12
TCOF1-201ENST00000323668 PDYNP01213 254 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 ATP1B2P14415 290 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 APOFQ13790 326 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 TRIM48Q8IWZ4 208 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 ZNF513Q8N8E2 541 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 SLC38A4Q969I6 547 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 MRPL48Q96GC5 212 aaKnown RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 SYT17Q9BSW7 474 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 GPR62Q9BZJ7 368 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 NME7Q9Y5B8 376 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 ZW10O43264 779 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 COCHO43405 550 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 ARNTP27540 789 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 SLC15A1P46059 708 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 KCNC1P48547 511 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 CREMQ03060 361 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 RELAQ04206 551 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 SPIN4Q56A73 249 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 XKR4Q5GH76 650 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 TPGS2Q68CL5 300 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 LRRC66Q68CR7 880 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 TXNDC8Q6A555 127 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 ZNF598Q86UK7 904 aaKnown RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 SPARTQ8N0X7 666 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 OXR1Q8N573 874 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 GEMIN6Q8WXD5 167 aaKnown RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 MKLN1Q9UL63 735 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 MAGED1Q9Y5V3 778 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 MROH6A6NGR9 719 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 PRMT3O60678 531 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 NME6O75414 186 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 RETP07949 1114 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 OR2B6P58173 313 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 CDK6Q00534 326 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 CLCA4Q14CN2 919 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 OTUD1Q5VV17 481 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-201ENST00000323668 TUBA3EQ6PEY2 450 aa14.32□□□□□ -0.12
TCOF1-201ENST00000323668 NPAS3Q8IXF0 933 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms