RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 TSPAN18Q96SJ8 248 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 SLC6A7Q99884 636 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 HINT2Q9BX68 163 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 P2RX2Q9UBL9 471 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 CNTNAP4Q9C0A0 1308 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 H7C417 338 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 AXIN1O15169 862 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 RPA4Q13156 261 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 KCTD19Q17RG1 926 aaPredicted RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 C12orf40Q86WS4 652 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 RGMAQ96B86 450 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 FUZQ9BT04 418 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PCDHB16Q9NRJ7 776 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 hCG_1818297A0A087WSY0 165 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 ARGFXA6NJG6 315 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 RAB36O95755 333 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 CH25HO95992 272 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 IFNL1Q8IU54 200 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 NCSTNQ92542 709 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 TRMOQ9BU70 441 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 ABCB8Q9NUT2 735 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 SPATA31A6Q5VVP1 1343 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PLATP00750 562 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 EPCAMP16422 314 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 CCNFP41002 786 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 CXCL9Q07325 125 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 DECR1Q16698 335 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 SAMD14Q8IZD0 417 aaPredicted RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 EZH1Q92800 747 aaPredicted RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 DNAJC5Q9H3Z4 198 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 SLCO1B3Q9NPD5 702 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 RPL36Q9Y3U8 105 aaKnown RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 CCL22O00626 93 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 SNX3O60493 162 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 GLDCP23378 1020 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 CRHR1P34998 444 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 TMEM44Q2T9K0 475 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 SH3D19Q5HYK7 790 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 MKLN1Q9UL63 735 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 CFAP20Q9Y6A4 193 aaKnown RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 MED14O60244 1454 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ANKRD34BA5PLL1 514 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 INSIG1O15503 277 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 NDST3O95803 873 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 HTR1AP08908 422 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 INHBEP58166 350 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 MTPNP58546 118 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 PRKD1Q15139 912 aaPredicted RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 UBE2UQ5VVX9 321 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 TTLQ8NG68 377 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 S100A16Q96FQ6 103 aaKnown RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 PWWP2AQ96N64 755 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 PTCH2Q9Y6C5 1203 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 PNLIPRP1P54315 467 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ZNF460Q14592 562 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 PDE12Q6L8Q7 609 aaKnown RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 DNAJA3Q96EY1 480 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 DPAGT1Q9H3H5 408 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 IFNA5P01569 189 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 TACR2P21452 398 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 SLC1A5Q15758 541 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ASTE1Q2TB18 679 aaPredicted RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 SLC26A9Q7LBE3 791 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 METTL27Q8N6F8 245 aaPredicted RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 TOP6BLQ8N6T0 577 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 KCTD15Q96SI1 283 aaPredicted RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 RAB11FIP5Q9BXF6 653 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ZNF451Q9Y4E5 1061 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ABHD2P08910 425 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ELNP15502 786 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 PTF1AQ7RTS3 328 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ELP5Q8TE02 316 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 EPS8L1Q8TE68 723 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 FAM210AQ96ND0 272 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 RIOX1Q9H6W3 641 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 HAO2Q9NYQ3 351 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 C19orf25Q9UFG5 118 aaPredicted RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 PCDH7O60245 1069 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ADRB2P07550 413 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 SLC5A3P53794 718 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 MAP2K5Q13163 448 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 TMEM119Q4V9L6 283 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 SHKBP1Q8TBC3 707 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 LMX1AQ8TE12 382 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ABCC3O15438 1527 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 COQ9O75208 318 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 RP2O75695 350 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 GNAZP19086 355 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 MREGQ8N565 214 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 STRADBQ9C0K7 418 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 SLC7A11Q9UPY5 501 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 A0A0U1RQK1 487 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 SPARCP09486 303 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 ACP5P13686 325 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 OR8K3Q8NH51 312 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 NPLOC4Q8TAT6 608 aa11.11□□□□□ -0.63
PTPN4-201ENST00000263708 DDX4Q9NQI0 724 aaKnown RBP11.11□□□□□ -0.63
PTPN4-201ENST00000263708 H3BNX3 289 aa11.1□□□□□ -0.63
PTPN4-201ENST00000263708 I3L521 148 aa11.1□□□□□ -0.63
PTPN4-201ENST00000263708 DGKGP49619 791 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms