RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MARCH9Q86YJ5 346 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 OR52E4Q8NGH9 312 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 BTNL10A8MVZ5 291 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CCNOP22674 350 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 SPIN4Q56A73 249 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CDKAL1Q5VV42 579 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 RASGRP3Q8IV61 690 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 ESX1Q8N693 406 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 TLR10Q9BXR5 811 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 POTEKPQ9BYX7 375 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 NPHP4O75161 1426 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 C2orf92A0A1B0GVN3 265 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 FAM230AA0A1W2PPH8 454 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CD44P16070 742 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 MLLT3P42568 568 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF460Q14592 562 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 GPR157Q5UAW9 335 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 KIAA0319Q5VV43 1072 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 WSCD1Q658N2 575 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 UBQLNLQ8IYU4 475 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 OR4K17Q8NGC6 315 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 COPZ2Q9P299 210 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 GPR75-ASB3A0A0A6YYF3 556 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 PTPRAP18433 802 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 MSX2P35548 267 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 ANKDD1AQ495B1 522 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 GPR153Q6NV75 609 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 DPEP2Q9H4A9 486 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 SAV1Q9H4B6 383 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 HCRTR2O43614 444 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 FOXK1P85037 733 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 NOXRED1Q6NXP6 359 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 KIF18BQ86Y91 864 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 IQCF1Q8N6M8 205 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 FEM1CQ96JP0 617 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 C19orf25Q9UFG5 118 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 BACE2Q9Y5Z0 518 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 INO80Q9ULG1 1556 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 MYPNQ86TC9 1320 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 TRAPPC6AO75865 159 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 RPP14O95059 124 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 SCARB2Q14108 478 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 SYT16Q17RD7 645 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF767PQ75MW2 155 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CLEC10AQ8IUN9 316 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 OR14C36Q8NHC7 312 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 ZCCHC10Q8TBK6 192 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CCDC106Q9BWC9 280 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 PLK2Q9NYY3 685 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 TRPM1Q7Z4N2 1603 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 DLGAP1O14490 977 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CDK14O94921 469 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 MATN1P21941 496 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 SLC25A52Q3SY17 297 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CLEC12AQ5QGZ9 265 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 PTPRJQ12913 1337 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 KCNU1A8MYU2 1149 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 DPYSL2Q16555 572 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 FRZBQ92765 325 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 GAS2L1Q99501 681 aaPredicted RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 KLRF1Q9NZS2 232 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 TMED5Q9Y3A6 229 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CSDE1O75534 798 aaKnown RBP13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 ZSCAN5DPP0CG00 497 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 TPSB2P20231 275 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 NCS1P62166 190 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 CLCQ05315 142 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 ADGRE1Q14246 886 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 TPSAB1Q15661 275 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 NOMO2Q5JPE7 1267 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 ZFPM1Q8IX07 1006 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 RGMAQ96B86 450 aa13.61□□□□□ -0.23
CCDC88A-201ENST00000263630 TLR4O00206 839 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 TLR5O60602 858 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 GLT8D1Q68CQ7 371 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 C2orf74A8MZ97 194 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 TULP2O00295 520 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 TOR1BO14657 336 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 CLNKQ7Z7G1 428 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 MON1AQ86VX9 555 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF45Q02386 682 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 BTBD16Q32M84 506 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 CCDC32Q9BV29 185 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 LRRC3Q9BY71 257 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 SLC7A8Q9UHI5 535 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 J3QLW9 94 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 PIRTP0C851 137 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF19P17023 458 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 CASP6P55212 293 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 MAXP61244 160 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 NFIXQ14938 502 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 GPR149Q86SP6 731 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 GRHL3Q8TE85 626 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 CASTOR1Q8WTX7 329 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 GLYATL2Q8WU03 294 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 GAD1Q99259 594 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 EBPLQ9BY08 206 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 FLRT1Q9NZU1 646 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 LRRIQ1Q96JM4 1722 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 XPNPEP2O43895 674 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms