RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 FAM86B1E9PN63 330 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CPNE3O75131 537 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TRAPPC6AO75865 159 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FUCA1P04066 466 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM86B2P0C5J1 330 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PRDX6P30041 224 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 OAZ1P54368 228 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TBPL1P62380 186 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FOXK2Q01167 660 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 COTL1Q14019 142 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PON3Q15166 354 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TFDP3Q5H9I0 405 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM26DQ5JW98 314 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TNFAIP8L2Q6P589 184 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM199XQ6PEV8 388 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 C3orf62Q6ZUJ4 267 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC16A9Q7RTY1 509 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DHDDSQ86SQ9 333 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ARMC8Q8IUR7 673 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ALLCQ8N6M5 410 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM86B1Q8N7N1 296 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ATAD1Q8NBU5 361 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CASKIN2Q8WXE0 1202 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ARNTL2Q8WYA1 636 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM143Q96AN5 459 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TXNDC15Q96J42 360 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 COG8Q96MW5 612 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PWWP2AQ96N64 755 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SEPHS2Q99611 448 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 VRK1Q99986 396 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MGME1Q9BQP7 344 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TLR10Q9BXR5 811 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC22A4Q9H015 551 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ISCUQ9H1K1 167 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TUT1Q9H6E5 874 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 IL1RAPQ9NPH3 570 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TCF7L2Q9NQB0 619 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CDKN2AIPQ9NXV6 580 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TRHDEQ9UKU6 1024 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FN1P02751 2386 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 A8MVM7 634 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 BCKDKO14874 412 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 INPPL1O15357 1258 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DUX1O43812 170 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TRUB2O95900 331 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 WNT11O96014 354 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CD46P15529 392 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SOX9P48436 509 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SEPHS1P49903 392 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF543Q08ER8 600 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RPA4Q13156 261 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FASTKQ14296 549 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 USP10Q14694 798 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF169Q14929 603 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NR1I3Q14994 352 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 VPS72Q15906 364 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 KCNA10Q16322 511 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF311Q5JNZ3 666 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 KHDC1LQ5JSQ8 128 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TPGS1Q6ZTW0 290 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 GPAT4Q86UL3 456 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM161BQ8NDZ6 487 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM111AQ96PZ2 611 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MEIS3Q99687 375 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 VPS25Q9BRG1 176 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 LYARQ9NX58 379 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MRPS7Q9Y2R9 242 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CEMIPQ8WUJ3 1361 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PALLDQ8WX93 1383 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UGGT1Q9NYU2 1555 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 C12orf71A8MTZ7 269 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 KCNU1A8MYU2 1149 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PLA2G6O60733 806 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CLN5O75503 358 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RECQL5O94762 991 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TACSTD2P09758 323 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 LCN1P31025 176 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MPIP34949 423 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ACY1Q03154 408 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PCDH1Q08174 1060 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 GINS1Q14691 196 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ARL6IP1Q15041 203 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 LRRC41Q15345 812 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SF1Q15637 639 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ARPINQ7Z6K5 226 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC22A15Q8IZD6 547 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF276Q8N554 614 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 METTL25Q8N6Q8 603 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PLA2G15Q8NCC3 412 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC35F5Q8WV83 523 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ING5Q8WYH8 240 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RNF25Q96BH1 459 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PYCR2Q96C36 320 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RNF170Q96K19 258 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC4A5Q9BY07 1137 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UNKLQ9H9P5 680 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DECR2Q9NUI1 292 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NARFQ9UHQ1 456 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms