RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 AFF3P51826 1226 aaKnown RBP17.79■□□□□ 0.44
CLN3-254ENST00000637050 ZNF33BQ06732 778 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 C1orf61Q13536 156 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 CATSPEREQ5SY80 951 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 FRG2Q64ET8 278 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 PMS2CLQ68D20 193 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 NXPE4Q6UWF7 544 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 TMPRSS11BQ86T26 416 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 ZFPM2Q8WW38 1151 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 FRG2BQ96QU4 278 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 TAC3Q9UHF0 121 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 TRBV23OR9-2A0A075B6M9 112 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 KIR2DS5A0A0G2JLQ3 304 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 A0A0G2JNG1 304 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 KIR2DS3K7RE56 304 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 LSM1O15116 133 aaKnown RBP17.78■□□□□ 0.44
CLN3-254ENST00000637050 RGS14O43566 566 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 SHMT2P34897 504 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 SCTRP47872 440 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 ATP4BP51164 291 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 KIR2DS5Q14953 304 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 ELOCQ15369 112 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 ATP6AP1LQ52LC2 224 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 SGO1Q5FBB7 561 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 C6orf136Q5SQH8 315 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 SPATA19Q7Z5L4 167 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 DTWD2Q8NBA8 298 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 WDR20Q8TBZ3 569 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 SELENOMQ8WWX9 145 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 SH3KBP1Q96B97 665 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 EFCAB11Q9BUY7 163 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 ACTR5Q9H9F9 607 aaPredicted RBP17.78■□□□□ 0.44
CLN3-254ENST00000637050 SLC40A1Q9NP59 571 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 FBXO4Q9UKT5 387 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 PCDHGA11Q9Y5H2 935 aa17.78■□□□□ 0.44
CLN3-254ENST00000637050 PRICKLE3O43900 615 aaPredicted RBP17.77■□□□□ 0.44
CLN3-254ENST00000637050 SLC2A4P14672 509 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 CALB2P22676 271 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 NEK2P51955 445 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 NCALDP61601 193 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 ERVK-8P63133 956 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 UBE2IP63279 158 aaKnown RBP17.77■□□□□ 0.44
CLN3-254ENST00000637050 IRX1P78414 480 aaPredicted RBP17.77■□□□□ 0.44
CLN3-254ENST00000637050 SRSF5Q13243 272 aaKnown RBP17.77■□□□□ 0.44
CLN3-254ENST00000637050 SQLEQ14534 574 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 NAA25Q14CX7 972 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 LYSMD4Q5XG99 296 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 C17orf64Q86WR6 236 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 NAGSQ8N159 534 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 MTFMTQ96DP5 389 aaKnown RBP17.77■□□□□ 0.44
CLN3-254ENST00000637050 ACAT2Q9BWD1 397 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 POT1Q9NUX5 634 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 GEMIN8Q9NWZ8 242 aaKnown RBP17.77■□□□□ 0.44
CLN3-254ENST00000637050 TAGLN3Q9UI15 199 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 THADAQ6YHU6 1953 aa17.77■□□□□ 0.44
CLN3-254ENST00000637050 CDH1P12830 882 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 PIK3R1P27986 724 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 PSMB5P28074 263 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 PRDX6P30041 224 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 DHPSP49366 369 aaPredicted RBP17.77■□□□□ 0.43
CLN3-254ENST00000637050 C21orf59P57076 290 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 LAPTM5Q13571 262 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 NR6A1Q15406 480 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 SMU1Q2TAY7 513 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 PAGE2BQ5JRK9 111 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 MED27Q6P2C8 311 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 AMIGO1Q86WK6 493 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 FAM46DQ8NEK8 389 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 ABHD11Q8NFV4 315 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 OR2A1Q8NGT9 310 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 LCN9Q8WX39 176 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 PATE1Q8WXA2 126 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 PPP3R2Q96LZ3 170 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 ACPTQ9BZG2 426 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 TWSG1Q9GZX9 223 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 PELI2Q9HAT8 420 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 OR6C2Q9NZP2 312 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 CPNE7Q9UBL6 633 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 SPASTQ9UBP0 616 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 PCDHB11Q9Y5F2 797 aa17.77■□□□□ 0.43
CLN3-254ENST00000637050 ANKRD65E5RJM6 399 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 NPIPB8E9PQR5 432 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 HNRNPCL1O60812 293 aaKnown RBP17.76■□□□□ 0.43
CLN3-254ENST00000637050 VIPP01282 170 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 ESRRAP11474 423 aaPredicted RBP17.76■□□□□ 0.43
CLN3-254ENST00000637050 MRPL19P49406 292 aaKnown RBP17.76■□□□□ 0.43
CLN3-254ENST00000637050 HNRNPKP61978 463 aaKnown RBP eCLIP17.76■□□□□ 0.43
CLN3-254ENST00000637050 YBX1P67809 324 aaKnown RBP17.76■□□□□ 0.43
CLN3-254ENST00000637050 HMGCS1Q01581 520 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 EMX2Q04743 252 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 SLBPQ14493 270 aaKnown RBP eCLIP17.76■□□□□ 0.43
CLN3-254ENST00000637050 TEAD4Q15561 434 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 GSTA3Q16772 222 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 AP5B1Q2VPB7 878 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 PLK5Q496M5 336 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 GKN2Q86XP6 184 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 FAM129CQ86XR2 697 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 TRIM48Q8IWZ4 208 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 LAS2Q8IYD9 372 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 OR7G3Q8NG95 312 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms