RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 MAD2L1Q13257 205 aaPredicted RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 GTF2H3Q13889 308 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 ZBTB6Q15916 424 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 PCSK7Q16549 785 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 INO80DQ53TQ3 878 aaPredicted RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 RUNDC3AQ59EK9 446 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 TJAP1Q5JTD0 557 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 SCIMPQ6UWF3 145 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 Q6ZSR9 355 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 LDB1Q86U70 411 aaPredicted RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 ARHGAP12Q8IWW6 846 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 ATG16L2Q8NAA4 619 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 C9orf43Q8TAL5 461 aaPredicted RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 ELMO1Q92556 727 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 DNASE1L2Q92874 299 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 FAM120BQ96EK7 910 aaKnown RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF419Q96HQ0 510 aaPredicted RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 FRMD6Q96NE9 622 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 FYTTD1Q96QD9 318 aaKnown RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 OR51E2Q9H255 320 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 SMURF1Q9HCE7 757 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 IL1RAPQ9NPH3 570 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 VNN3Q9NY84 501 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 B3GNT2Q9NY97 397 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 MARCH4Q9P2E8 410 aaPredicted RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 HECAQ9UBI9 543 aaPredicted RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 SPASTQ9UBP0 616 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 TEKT2Q9UIF3 430 aa10.54□□□□□ -0.72
UPF3A-212ENST00000619079 AGO1Q9UL18 857 aaKnown RBP10.54□□□□□ -0.72
UPF3A-212ENST00000619079 OR6C70A6NIJ9 312 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 MYO1GB0I1T2 1018 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 DNTTP04053 509 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 SYN1P17600 705 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 ITGB6P18564 788 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 OGNP20774 298 aaKnown RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 MYL9P24844 172 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 HOXA9P31269 272 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 GZMKP49863 264 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 RPP38P78345 283 aaKnown RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 NPRL3Q12980 569 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 KIAA0040Q15053 153 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 EIF4HQ15056 248 aaKnown RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 NR6A1Q15406 480 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 TMPRSS11AQ6ZMR5 421 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF367Q7RTV3 350 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 RNF130Q86XS8 419 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 ENTHD1Q8IYW4 607 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 RDH10Q8IZV5 341 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 APH1BQ8WW43 257 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 HRASLS5Q96KN8 279 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 C1orf74Q96LT6 269 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 PPP3R2Q96LZ3 170 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 CENPOQ9BU64 300 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 TTLL2Q9BWV7 592 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 ULBP1Q9BZM6 244 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 TMEM245Q9H330 911 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 CATSPERBQ9H7T0 1116 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 PDP1Q9P0J1 537 aaPredicted RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 NUFIP1Q9UHK0 495 aaKnown RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 TRMT6Q9UJA5 497 aaKnown RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 UBQLN1Q9UMX0 589 aaKnown RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 MIA3Q5JRA6 1907 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 NUP205Q92621 2012 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 EFCAB10A6NFE3 127 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 YJEFN3A6XGL0 299 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 TFECO14948 347 aaPredicted RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 KIAA0513O60268 411 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 PDE9AO76083 593 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 CCNDBP1O95273 360 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 C1QBP02746 253 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 NAGAP17050 411 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 PRDX3P30048 256 aaKnown RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 CCL23P55773 120 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 TIAL1Q01085 375 aaKnown RBP eCLIP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 SEMA3AQ14563 771 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 CARD16Q5EG05 197 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 GCNT7Q6ZNI0 430 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 CLEC20AQ6ZU45 233 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 CEP68Q76N32 757 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 GLRX5Q86SX6 157 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 CYP4Z2PQ8N1L4 340 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 DNAJC22Q8N4W6 341 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 DEDD2Q8WXF8 326 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 WDFY2Q96P53 400 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 AARSD1Q9BTE6 412 aaKnown RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 GABARAPL3Q9BY60 117 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 IKZF5Q9H5V7 419 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 NARFLQ9H6Q4 476 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 C12orf4Q9NQ89 552 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 WDR70Q9NW82 654 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 TAS2R13Q9NYV9 303 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 PCDH10Q9P2E7 1040 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF225Q9UK10 706 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 POLR3HQ9Y535 204 aaPredicted RBP10.53□□□□□ -0.72
UPF3A-212ENST00000619079 IPPQ9Y573 584 aa10.53□□□□□ -0.72
UPF3A-212ENST00000619079 A0A096LPI6 279 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 NT5C1B-RDH14C9J2C7 533 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 ERN1O75460 977 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 OR4F21O95013 312 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 RPLP2P05387 115 aaKnown RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms