RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PGRP06401 933 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 SLC35G4P0C7Q5 338 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 NPPBP16860 134 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 SLC7A1P30825 629 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 TAP2Q03519 686 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 FGL2Q14314 439 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 FAM174BQ3ZCQ3 159 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 EOGTQ5NDL2 527 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 COL13A1Q5TAT6 717 aaPredicted RBP13.73□□□□□ -0.21
LIG3-205ENST00000585941 LCN8Q6JVE9 175 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 TLDC1Q6P9B6 456 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 SLC2A7Q6PXP3 512 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 SUSD1Q6UWL2 747 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 DLEU7Q6UYE1 221 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 RNF111Q6ZNA4 994 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 PTRH1Q86Y79 214 aaKnown RBP13.73□□□□□ -0.21
LIG3-205ENST00000585941 KIAA2013Q8IYS2 634 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 OR5K2Q8NHB8 316 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 DNAJB14Q8TBM8 379 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 NEIL2Q969S2 332 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 SIPA1Q96FS4 1042 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 ZNF570Q96NI8 536 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 UHRF1Q96T88 793 aaPredicted RBP13.73□□□□□ -0.21
LIG3-205ENST00000585941 CGREF1Q99674 301 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 KCTD14Q9BQ13 255 aaPredicted RBP13.73□□□□□ -0.21
LIG3-205ENST00000585941 OSBPL6Q9BZF3 934 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 ALG2Q9H553 416 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 RMND5AQ9H871 391 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 SPATA7Q9P0W8 599 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 LRCH1Q9Y2L9 728 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 AP4S1Q9Y587 144 aa13.73□□□□□ -0.21
LIG3-205ENST00000585941 KANSL1LA0AUZ9 987 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 FOXE1O00358 373 aaPredicted RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 HOXC4P09017 264 aaPredicted RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 C1GALT1C1LP0DN25 315 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 PRPS1L1P21108 318 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 HTR1EP28566 365 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 S100A3P33764 101 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 HNRNPFP52597 415 aaKnown RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 DGKQP52824 942 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 PHEXP78562 749 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 LIPEQ05469 1076 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ACSM2AQ08AH3 577 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ADGRE1Q14246 886 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TRIP10Q15642 601 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SPIN4Q56A73 249 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ACSM2BQ68CK6 577 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 NOXRED1Q6NXP6 359 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 LCTLQ6UWM7 567 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 LRRC56Q8IYG6 542 aaPredicted RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 RAB42Q8N4Z0 105 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 OR7G3Q8NG95 312 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SLC45A3Q96JT2 553 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ECSITQ9BQ95 431 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 PCBD2Q9H0N5 130 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TRIT1Q9H3H1 467 aaKnown RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 SLC23A2Q9UGH3 650 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 MCM8Q9UJA3 840 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SLC17A4Q9Y2C5 497 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 DLGAP4Q9Y2H0 992 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TSC22D4Q9Y3Q8 395 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 OR1A2Q9Y585 309 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SNX13Q9Y5W8 968 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 PCM1Q15154 2024 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 DOCK9Q9BZ29 2069 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3DA0A087WVF3 549 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3IA0A087WXS9 549 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3EA0A087X179 549 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3KA0A087X1G2 549 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3FA6NER0 549 aaPredicted RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3LB9A6J9 549 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 CACNB4O00305 520 aaPredicted RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 ERN1O75460 977 aaKnown RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 RPSAP08865 295 aaKnown RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3HP0C7X1 549 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ERGP11308 486 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ACADMP11310 421 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SDC1P18827 310 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ASMTP46597 345 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 GSK3BP49841 420 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 C21orf58P58505 322 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SRSF11Q05519 484 aaKnown RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 MAP7Q14244 749 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 FXNQ16595 210 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SLC44A4Q53GD3 710 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SPANXN4Q5MJ08 99 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 OGFRL1Q5TC84 451 aaPredicted RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3GQ6DHY5 549 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3CQ6IPX1 549 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 IZUMO2Q6UXV1 221 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TMPRSS11BQ86T26 416 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 PROSER1Q86XN7 944 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 LAS2Q8IYD9 372 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D21Q8IYX1 336 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TBC1D3Q8IZP1 549 aaPredicted RBP13.72□□□□□ -0.21
LIG3-205ENST00000585941 SLC44A3Q8N4M1 653 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 DENND6BQ8NEG7 585 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ADCY4Q8NFM4 1077 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 TNIP2Q8NFZ5 429 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 SLC5A11Q8WWX8 675 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms