RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 IRF8Q02556 426 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 ZC3H14Q6PJT7 736 aaKnown RBP24.23■■□□□ 1.47
SHMT1-207ENST00000580002 TMPRSS11BQ86T26 416 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 SLC9B2Q86UD5 537 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 C17orf82Q86X59 251 aaPredicted RBP24.23■■□□□ 1.47
SHMT1-207ENST00000580002 GMEB2Q9UKD1 530 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 KCNE2Q9Y6J6 123 aa24.23■■□□□ 1.47
SHMT1-207ENST00000580002 ATP6AP2A0A1C7CYW4 349 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 OR6C74A6NCV1 312 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 CLGNO14967 610 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 CASC3O15234 703 aaKnown RBP24.22■■□□□ 1.47
SHMT1-207ENST00000580002 ATP6AP2O75787 350 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 EPN2O95208 641 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 HSD17B2P37059 387 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 NEK2P51955 445 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 TUBB3Q13509 450 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 SGO1Q5FBB7 561 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 CHCHD2P9Q5T1J5 151 aaPredicted RBP24.22■■□□□ 1.47
SHMT1-207ENST00000580002 LCTLQ6UWM7 567 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 TMEM26Q6ZUK4 368 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 ALYREFQ86V81 257 aaKnown RBP24.22■■□□□ 1.47
SHMT1-207ENST00000580002 ZNF740Q8NDX6 193 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 GPR156Q8NFN8 814 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 CEP76Q8TAP6 659 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 HMGCLL1Q8TB92 370 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 SAP25Q8TEE9 199 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 SETD7Q8WTS6 366 aaKnown RBP24.22■■□□□ 1.47
SHMT1-207ENST00000580002 PPM1MQ96MI6 270 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 GOLGA4Q13439 2230 aaKnown RBP24.22■■□□□ 1.47
SHMT1-207ENST00000580002 PCM1Q15154 2024 aa24.22■■□□□ 1.47
SHMT1-207ENST00000580002 SDHDO14521 159 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 ARHGAP33O14559 1287 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 GIPC1O14908 333 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 SNUPNO95149 360 aaKnown RBP24.21■■□□□ 1.47
SHMT1-207ENST00000580002 UROSP10746 265 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 POLR2CP19387 275 aaPredicted RBP24.21■■□□□ 1.47
SHMT1-207ENST00000580002 HOXD12P35452 270 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 TCF15Q12870 199 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 ZNF438Q7Z4V0 828 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 L3MBTL4Q8NA19 623 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 CCDC197Q8NCU1 140 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 OR10G6Q8NH81 332 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 SLC5A11Q8WWX8 675 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 GTPBP2Q9BX10 602 aaKnown RBP24.21■■□□□ 1.47
SHMT1-207ENST00000580002 KCNK4Q9NYG8 393 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 DYRK1BQ9Y463 629 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 CUL9Q8IWT3 2517 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 IGKV1-8A0A0C4DH67 115 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 TRIM38O00635 465 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 TYRP1P17643 537 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 SHMT2P34897 504 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 PPP1CAP62136 330 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 ABRAXAS2Q15018 415 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 ZRSR2Q15696 482 aaKnown RBP24.21■■□□□ 1.47
SHMT1-207ENST00000580002 TRIM73Q86UV7 250 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 SLC35F3Q8IY50 421 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 PRSS33Q8NF86 280 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 FLVCR1-AS1Q8TAF5 88 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 TRPS1Q9UHF7 1281 aa24.21■■□□□ 1.47
SHMT1-207ENST00000580002 PCDH15Q96QU1 1955 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 SLC2A4P14672 509 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 GNAZP19086 355 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 C6orf132Q5T0Z8 1188 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 NXPE4Q6UWF7 544 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 DDIASQ8IXT1 998 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 CACNA2D3Q8IZS8 1091 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 RAB42Q8N4Z0 105 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 OR2T11Q8NH01 316 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 VTI1BQ9UEU0 232 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 ARL2BPQ9Y2Y0 163 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 CSNK1G3Q9Y6M4 447 aa24.2■■□□□ 1.46
SHMT1-207ENST00000580002 ISM1B1AKI9 464 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 H7BY64 318 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 MANBAO00462 879 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 HMOX2P30519 316 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 C14orf28Q4W4Y0 310 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 ICE2Q659A1 982 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 SDR16C5Q8N3Y7 309 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 RSC1A1Q92681 617 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 PRAP1Q96NZ9 151 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 RAB11FIP5Q9BXF6 653 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 GEMIN8Q9NWZ8 242 aaKnown RBP24.19■■□□□ 1.46
SHMT1-207ENST00000580002 GPRC5BQ9NZH0 403 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 OR6C2Q9NZP2 312 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 HEY2Q9UBP5 337 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 ZNF490Q9ULM2 529 aaPredicted RBP24.19■■□□□ 1.46
SHMT1-207ENST00000580002 RNF215Q9Y6U7 377 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 SPEGQ15772 3267 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 ZNF839A8K0R7 811 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 C1GALT1C1LP0DN25 315 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 CCND1P24385 295 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 KIAA1614Q5VZ46 1190 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 TMEM198Q66K66 360 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 IL27RAQ6UWB1 636 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 TWSG1Q9GZX9 223 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 MEAF6Q9HAF1 191 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 SLC6A20Q9NP91 592 aa24.19■■□□□ 1.46
SHMT1-207ENST00000580002 G3BP2Q9UN86 482 aaKnown RBP24.19■■□□□ 1.46
SHMT1-207ENST00000580002 SLCO1B7G3V0H7 640 aa24.18■■□□□ 1.46
SHMT1-207ENST00000580002 SNRNP200O75643 2136 aaKnown RBP24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms