RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 OR52N2Q8NGI0 321 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 TGIF2Q9GZN2 237 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 TRIM45Q9H8W5 580 aaPredicted RBP15.26■□□□□ 0.03
VPS53-218ENST00000575207 KCNK13Q9HB14 408 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 BPIFA1Q9NP55 256 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 YAE1D1Q9NRH1 226 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 NPFFR2Q9Y5X5 522 aa15.26■□□□□ 0.03
VPS53-218ENST00000575207 TRRAPQ9Y4A5 3859 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 IFRD1O00458 451 aaPredicted RBP15.25■□□□□ 0.03
VPS53-218ENST00000575207 AURKAO14965 403 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 MATN3O15232 486 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 STATHP02808 62 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 HLA-DQB2P05538 268 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 FBLP22087 321 aaKnown RBP15.25■□□□□ 0.03
VPS53-218ENST00000575207 SERPINB6P35237 376 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 RFC3P40938 356 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 EFNA3P52797 238 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 KIR2DS3Q14952 304 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 ZNF585AQ6P3V2 769 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 DET1Q7L5Y6 550 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 KIF18BQ86Y91 864 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 PHF13Q86YI8 300 aaPredicted RBP15.25■□□□□ 0.03
VPS53-218ENST00000575207 ZFP62Q8NB50 900 aaPredicted RBP15.25■□□□□ 0.03
VPS53-218ENST00000575207 OR5M9Q8NGP3 310 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 HM13Q8TCT9 377 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 FATE1Q969F0 183 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 PLCD4Q9BRC7 762 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 SMOXQ9NWM0 555 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 KLHL20Q9Y2M5 609 aa15.25■□□□□ 0.03
VPS53-218ENST00000575207 PRKDCP78527 4128 aaKnown RBP15.25■□□□□ 0.03
VPS53-218ENST00000575207 OR14I1A6ND48 311 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 F8VZ95 297 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 BCKDKO14874 412 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 SGTAO43765 313 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 SEC24DO94855 1032 aaPredicted RBP15.24■□□□□ 0.03
VPS53-218ENST00000575207 MSH3P20585 1137 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 PEBP1P30086 187 aaKnown RBP15.24■□□□□ 0.03
VPS53-218ENST00000575207 HMGCLP35914 325 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 ARL4AP40617 200 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 SORDQ00796 357 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 TNK1Q13470 666 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 BECN1Q14457 450 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 ZDHHC20Q5W0Z9 365 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 CREB3L4Q8TEY5 395 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 SELENOSQ9BQE4 189 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.24■□□□□ 0.03
VPS53-218ENST00000575207 TRPC4Q9UBN4 977 aa15.24■□□□□ 0.03
VPS53-218ENST00000575207 KLRC4-KLRK1H3BQV0 150 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 SRPX2O60687 465 aaPredicted RBP15.23■□□□□ 0.03
VPS53-218ENST00000575207 C8orf89P0DMQ9 161 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 FPR1P21462 350 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 PSMA2P25787 234 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 AKT1P31749 480 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 MON1BQ7L1V2 547 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 POLNQ7Z5Q5 900 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 SULF2Q8IWU5 870 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 SLC5A8Q8N695 610 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 NAT14Q8WUY8 206 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 TFGQ92734 400 aaPredicted RBP15.23■□□□□ 0.03
VPS53-218ENST00000575207 SRPK1Q96SB4 655 aaKnown RBP15.23■□□□□ 0.03
VPS53-218ENST00000575207 CCL19Q99731 98 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 ZFYVE21Q9BQ24 234 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 MMP25Q9NPA2 562 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 CDC42EP3Q9UKI2 254 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 KLF13Q9Y2Y9 288 aaPredicted RBP15.23■□□□□ 0.03
VPS53-218ENST00000575207 DYSFO75923 2080 aa15.23■□□□□ 0.03
VPS53-218ENST00000575207 IGHV3-20A0A0C4DH32 117 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 A8MV72 311 aaPredicted RBP15.22■□□□□ 0.03
VPS53-218ENST00000575207 ISM1B1AKI9 464 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 TPBGLP0DKB5 382 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 EGR1P18146 543 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 CFPP27918 469 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 GRIA3P42263 894 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 PTH2RP49190 550 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 CYB561P49447 251 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 VSX2P58304 361 aaPredicted RBP15.22■□□□□ 0.03
VPS53-218ENST00000575207 ITGA9Q13797 1035 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 PPP2R5EQ16537 467 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 DPYSL2Q16555 572 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 HYAL4Q2M3T9 481 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 WASHC2DQ5SRD0 308 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 KLHDC7AQ5VTJ3 777 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 SHISA5Q8N114 240 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 MAPK1IP1LQ8NDC0 245 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 M1APQ8TC57 530 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 CSPG4P5Q96PW8 444 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 PCDHB18PQ96TA0 734 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 MTRF1LQ9UGC7 380 aaKnown RBP15.22■□□□□ 0.03
VPS53-218ENST00000575207 MAN1B1Q9UKM7 699 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 SPO11Q9Y5K1 396 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 RYR3Q15413 4870 aa15.22■□□□□ 0.03
VPS53-218ENST00000575207 DSCAMO60469 2012 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 HSPB2A8KAH6 182 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 DVL2O14641 736 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 FFAR3O14843 346 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 GPR42O15529 346 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 WDR1O75083 606 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 PAX1P15863 534 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 MIPP30301 263 aa15.21■□□□□ 0.03
VPS53-218ENST00000575207 HSPB2Q16082 182 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms