RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ASTLQ6HA08 431 aaPredicted RBP22.11■■□□□ 1.13
VPS53-211ENST00000571805 PGBD3Q8N328 593 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 ZNF641Q96N77 438 aaPredicted RBP22.11■■□□□ 1.13
VPS53-211ENST00000571805 GABARAPL1Q9H0R8 117 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 ATG10Q9H0Y0 220 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 TRIT1Q9H3H1 467 aaKnown RBP22.11■■□□□ 1.13
VPS53-211ENST00000571805 MAFFQ9ULX9 164 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 ABCG2Q9UNQ0 655 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 LEFTY2O00292 366 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 POP4O95707 220 aaKnown RBP22.11■■□□□ 1.13
VPS53-211ENST00000571805 BCL10O95999 233 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 GNRH1P01148 92 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 GJA1P17302 382 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 CYP2A7P20853 494 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 HALP42357 657 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 AP1S2P56377 157 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 WNT3P56703 355 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 CHIT1Q13231 466 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 UGT8Q16880 541 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 RASGRP3Q8IV61 690 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 ELMOD1Q8N336 334 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 OR7A2PQ8NGA2 310 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 CSGALNACT1Q8TDX6 532 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 NELL1Q92832 810 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 ZNF566Q969W8 418 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 CCDC138Q96M89 665 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 REXO4Q9GZR2 422 aaKnown RBP22.11■■□□□ 1.13
VPS53-211ENST00000571805 IL1RAPQ9NPH3 570 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 TBC1D23Q9NUY8 699 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 FAIMQ9NVQ4 179 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 ORC6Q9Y5N6 252 aa22.11■■□□□ 1.13
VPS53-211ENST00000571805 EVPLLA8MZ36 301 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 BCKDKO14874 412 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 MTX2O75431 263 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 PARNO95453 639 aaKnown RBP22.1■■□□□ 1.13
VPS53-211ENST00000571805 ZNF682O95780 498 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 ITIH1P19827 911 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 PRPS1L1P21108 318 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 ATN1P54259 1190 aaPredicted RBP22.1■■□□□ 1.13
VPS53-211ENST00000571805 RAPSNQ13702 412 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 CEP68Q76N32 757 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 SMYD1Q8NB12 490 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 CHST14Q8NCH0 376 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 PIK3C3Q8NEB9 887 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 RNF217Q8TC41 542 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 MCOLN3Q8TDD5 553 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 PLEKHA8Q96JA3 519 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 NODALQ96S42 347 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 FUNDC2Q9BWH2 189 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 EBPLQ9BY08 206 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 SMG9Q9H0W8 520 aaKnown RBP22.1■■□□□ 1.13
VPS53-211ENST00000571805 SPG21Q9NZD8 308 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 SLCO3A1Q9UIG8 710 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 CLIC1O00299 241 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 SGTAO43765 313 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 KCNK5O95279 499 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 CCDC159P0C7I6 412 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 CD22P20273 847 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 C21orf59P57076 290 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 ZCCHC8Q6NZY4 707 aaKnown RBP22.1■■□□□ 1.13
VPS53-211ENST00000571805 SLC16A12Q6ZSM3 486 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 ZZZ3Q8IYH5 903 aa22.1■■□□□ 1.13
VPS53-211ENST00000571805 PTGES3LE9PB15 166 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 FPGTO14772 594 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 LILRB3O75022 631 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 SEMG1P04279 462 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 ENGP17813 658 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 IGFBP5P24593 272 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 HTR1BP28222 390 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 MLLT10P55197 1068 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 OR2T5Q6IEZ7 315 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 OR2T29Q8NH02 315 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 CNIH3Q8TBE1 160 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 TRAV19A0A0A6YYK7 116 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 PABPN1LA6NDY0 278 aaKnown RBP22.09■■□□□ 1.13
VPS53-211ENST00000571805 UPK3BL1B0FP48 263 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 UPK3BL2E5RIL1 263 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 GPX2P18283 190 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 DAPP51397 102 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 GP2P55259 537 aaKnown RBP22.09■■□□□ 1.13
VPS53-211ENST00000571805 SRSF11Q05519 484 aaKnown RBP22.09■■□□□ 1.13
VPS53-211ENST00000571805 AQP6Q13520 282 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 LAPTM4AQ15012 233 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 VMACQ2NL98 169 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 NEK10Q6ZWH5 1172 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 GPR155Q7Z3F1 870 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 GALNT5Q7Z7M9 940 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 NAT16Q8N8M0 369 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 PPP1R14BQ96C90 147 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 FBXL8Q96CD0 374 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 PANX1Q96RD7 426 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 SLC46A2Q9BY10 475 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 DGCR6LQ9BY27 220 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 RC3H2Q9HBD1 1191 aaKnown RBP22.09■■□□□ 1.13
VPS53-211ENST00000571805 TM9SF3Q9HD45 589 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 TBCCD1Q9NVR7 557 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 BAG5Q9UL15 447 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 SNX5Q9Y5X3 404 aa22.09■■□□□ 1.13
VPS53-211ENST00000571805 A0A1W2PRU2 124 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 M0QX08 132 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms