RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 DOCK6Q96HP0 2047 aa8.52□□□□□ -1.05
LINC00558-201ENST00000569422 CHD7Q9P2D1 2997 aa8.52□□□□□ -1.05
LINC00558-201ENST00000569422 MYOFQ9NZM1 2061 aa8.52□□□□□ -1.05
LINC00558-201ENST00000569422 ARNTLO00327 626 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 RTCAO00442 366 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PRAMEF4O60810 478 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 KCNJ13O60928 360 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 OLFM2O95897 454 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 GBAP04062 536 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NTRK1P04629 796 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 ABCB1P08183 1280 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PABPC1P11940 636 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 WDR5P61964 334 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 CTBSQ01459 385 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 IRF8Q02556 426 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 MAD2L1Q13257 205 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 SLC14A1Q13336 389 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 MEP1AQ16819 746 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 XKR6Q5GH73 641 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PRAMEF9Q5VWM5 478 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 LYPLAL1Q5VWZ2 237 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 GDPD4Q6W3E5 623 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 CYP2U1Q7Z449 544 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 TMC8Q8IU68 726 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PARP8Q8N3A8 854 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 KCT2Q8NC54 265 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 ZNF548Q8NEK5 533 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 C12orf43Q96C57 262 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 TCF25Q9BQ70 676 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 DPH2Q9BQC3 489 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NTMT1Q9BV86 223 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 TOR3AQ9H497 397 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 DNAAF2Q9NVR5 837 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 IFT80Q9P2H3 777 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 COQ6Q9Y2Z9 468 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NEUROG3Q9Y4Z2 214 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 ST14Q9Y5Y6 855 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 KIAA0100Q14667 2235 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NUP214P35658 2090 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 GFRA2O00451 464 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 RFXANKO14593 260 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 GRM6O15303 877 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 POP4O95707 220 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 LATS1O95835 1130 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 IL6P05231 212 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 THRBP10828 461 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 MSH3P20585 1137 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 AQP1P29972 269 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NAE1Q13564 534 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NANOGNBQ7Z5D8 188 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PATL1Q86TB9 770 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 CACUL1Q86Y37 369 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 SYT12Q8IV01 421 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 RIMKLAQ8IXN7 391 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 C2orf73Q8N5S3 287 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 HM13Q8TCT9 377 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 MCOLN3Q8TDD5 553 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 BPIFB1Q8TDL5 484 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 ZNF689Q96CS4 500 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 MYOCQ99972 504 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 UGT2B28Q9BY64 529 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 MUC13Q9H3R2 512 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 FAM83DQ9H4H8 585 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 CLMPQ9H6B4 373 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 DKK3Q9UBP4 350 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 TRPS1Q9UHF7 1281 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PPT2Q9UMR5 302 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 SNX6Q9UNH7 406 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 XIRP2A4UGR9 3374 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 CHD5Q8TDI0 1954 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 hCG_2039718K7EN88 272 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 UPK1AO00322 258 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NDUFB5O43674 189 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 CREG1O75629 220 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 SDC1P18827 310 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 MAP4P27816 1152 aaKnown RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 AOAHP28039 575 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PIGAP37287 484 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 BDKRB1P46663 353 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 ALDH3B2P48448 385 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 GALK1P51570 392 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 ERVFC1P60507 584 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 DAG1Q14118 895 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 RAB39AQ14964 217 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PON2Q15165 354 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 SYTL3Q4VX76 610 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 TMEM215Q68D42 235 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 CES5AQ6NT32 575 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 ANKRD33Q7Z3H0 272 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NECAB2Q7Z6G3 386 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 TMEM179BQ7Z7N9 219 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 GPR180Q86V85 440 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 BPIFB6Q8NFQ5 453 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 OR2A12Q8NGT7 310 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 ISOC1Q96CN7 298 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PANX1Q96RD7 426 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 NPLQ9BXD5 320 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 DGCR6LQ9BY27 220 aa8.51□□□□□ -1.05
LINC00558-201ENST00000569422 PAK6Q9NQU5 681 aaPredicted RBP8.51□□□□□ -1.05
LINC00558-201ENST00000569422 HSFX1Q9UBD0 423 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms