RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TRIM31Q9BZY9 425 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 ING2Q9H160 280 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 SLC6A20Q9NP91 592 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 MRPS30Q9NP92 439 aaKnown RBP19.44■□□□□ 0.7
CLK3-225ENST00000569063 PPANQ9NQ55 473 aaKnown RBP19.44■□□□□ 0.7
CLK3-225ENST00000569063 NDOR1Q9UHB4 597 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 TP53TG5Q9Y2B4 290 aa19.44■□□□□ 0.7
CLK3-225ENST00000569063 A0A1B0GX78 115 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 ARGFXA6NJG6 315 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 DSCR3O14972 297 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 NRP2O60462 931 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 DNAJB5O75953 348 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 ITGAXP20702 1163 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 RPL21P46778 160 aaKnown RBP19.43■□□□□ 0.7
CLK3-225ENST00000569063 CDKN2DP55273 166 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 SSPNQ14714 243 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 FAM214AQ32MH5 1076 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 RBM20Q5T481 1227 aaKnown RBP19.43■□□□□ 0.7
CLK3-225ENST00000569063 CPZQ66K79 652 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 FRMPD2BQ6IN97 320 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 FBXO42Q6P3S6 717 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 TRMT10BQ6PF06 316 aaKnown RBP19.43■□□□□ 0.7
CLK3-225ENST00000569063 LRRC56Q8IYG6 542 aaPredicted RBP19.43■□□□□ 0.7
CLK3-225ENST00000569063 TTC29Q8NA56 475 aaPredicted RBP19.43■□□□□ 0.7
CLK3-225ENST00000569063 SPATA4Q8NEY3 305 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 PLCD4Q9BRC7 762 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 ACSS2Q9NR19 701 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 SLC22A11Q9NSA0 550 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 CUTCQ9NTM9 273 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 ANAPC2Q9UJX6 822 aa19.43■□□□□ 0.7
CLK3-225ENST00000569063 CORO1CQ9ULV4 474 aaPredicted RBP19.43■□□□□ 0.7
CLK3-225ENST00000569063 IGKV1-8A0A0C4DH67 115 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 A0A0J9YVX5 310 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 E7ESA3 106 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 K7EM74 188 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 CNOT3O75175 753 aaKnown RBP19.42■□□□□ 0.7
CLK3-225ENST00000569063 CCNDBP1O95273 360 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 SYF2O95926 243 aaKnown RBP19.42■□□□□ 0.7
CLK3-225ENST00000569063 C8GP07360 202 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 PIM1P11309 404 aaPredicted RBP19.42■□□□□ 0.7
CLK3-225ENST00000569063 RGS4P49798 205 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 VSX2P58304 361 aaPredicted RBP19.42■□□□□ 0.7
CLK3-225ENST00000569063 ETF1P62495 437 aaKnown RBP19.42■□□□□ 0.7
CLK3-225ENST00000569063 WASHC2DQ5SRD0 308 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 ICE2Q659A1 982 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 PAQR3Q6TCH7 311 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 MED25Q71SY5 747 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 RAB43Q86YS6 212 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 BBOF1Q8ND07 529 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 PPFIBP2Q8ND30 876 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 OR2Y1Q8NGV0 311 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 FKBP10Q96AY3 582 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 ZFYVE21Q9BQ24 234 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 TAC3Q9UHF0 121 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 SNX24Q9Y343 169 aa19.42■□□□□ 0.7
CLK3-225ENST00000569063 PTRH2Q9Y3E5 179 aaKnown RBP19.42■□□□□ 0.7
CLK3-225ENST00000569063 GCN1Q92616 2671 aaKnown RBP19.41■□□□□ 0.7
CLK3-225ENST00000569063 FER1L5A0AVI2 2057 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 LOC105369274A0A096LPK9 316 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 LOC102723532A0A0G2JNH3 316 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 FAM187AA6NFU0 413 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 IMPA1P29218 277 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 CASQ1P31415 396 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 FOLR3P41439 243 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 ABATP80404 500 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 RELAQ04206 551 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 PDIA2Q13087 525 aaKnown RBP19.41■□□□□ 0.7
CLK3-225ENST00000569063 CHAF1BQ13112 559 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 TSTA3Q13630 321 aaPredicted RBP19.41■□□□□ 0.7
CLK3-225ENST00000569063 SLC9A5Q14940 896 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 ZNF425Q6IV72 752 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 PAQR7Q86WK9 346 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 ANKMY2Q8IV38 441 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 OR4N4Q8N0Y3 316 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 TMEM102Q8N9M5 508 aaPredicted RBP19.41■□□□□ 0.7
CLK3-225ENST00000569063 MCOLN3Q8TDD5 553 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 PTERQ96BW5 349 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 CCDC138Q96M89 665 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 IP6K3Q96PC2 410 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 MLXIPLQ9NP71 852 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 UTP6Q9NYH9 597 aaKnown RBP19.41■□□□□ 0.7
CLK3-225ENST00000569063 SLC17A6Q9P2U8 582 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 ADAMTS6Q9UKP5 1117 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 VWA7Q9Y334 891 aa19.41■□□□□ 0.7
CLK3-225ENST00000569063 PCDHGA9Q9Y5G4 932 aaKnown RBP19.41■□□□□ 0.7
CLK3-225ENST00000569063 SEC16AO15027 2179 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 HYKKA2RU49 373 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 SLC16A5O15375 505 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 CEACAM4O75871 244 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 ALBP02768 609 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 CASRP41180 1078 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 CCL11P51671 97 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 RRADP55042 308 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 SP140Q13342 867 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 HECTD2Q5U5R9 776 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 ASB18Q6ZVZ8 466 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 OVCH1Q7RTY7 1134 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 MAATS1Q7Z4T9 603 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 PALM2Q8IXS6 379 aa19.4■□□□□ 0.7
CLK3-225ENST00000569063 MYO1HQ8N1T3 1032 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms