RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PADI2Q9Y2J8 665 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 PTRH2Q9Y3E5 179 aaKnown RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 PCDHGB7Q9Y5F8 929 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 MAD1L1Q9Y6D9 718 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 COMMD10Q9Y6G5 202 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 CCDC88CQ9P219 2028 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 CTAGE9A4FU28 777 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 VSTM2BA6NLU5 285 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 E5RI56 91 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 SORBS2O94875 1100 aaKnown RBP14.22□□□□□ -0.13
CLN3-213ENST00000565047 PGAM1P18669 254 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 ALAS2P22557 587 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 OTX2P32243 289 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 PGDP52209 483 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 PNLIPRP1P54315 467 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 PRDX1Q06830 199 aaKnown RBP14.22□□□□□ -0.13
CLN3-213ENST00000565047 SRSF1Q07955 248 aaKnown RBP eCLIP14.22□□□□□ -0.13
CLN3-213ENST00000565047 GRM7Q14831 915 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 NKG7Q16617 165 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 NADK2Q4G0N4 442 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 WASHC2DQ5SRD0 308 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 SUSD1Q6UWL2 747 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 RAB43Q86YS6 212 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 RAB42Q8N4Z0 105 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 CALML6Q8TD86 181 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 SMPDL3AQ92484 453 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 INPP5DQ92835 1189 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 NACC2Q96BF6 587 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 IP6K3Q96PC2 410 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 GPR21Q99679 349 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 SELENOSQ9BQE4 189 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 PLCD4Q9BRC7 762 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 DPH7Q9BTV6 452 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 WDR54Q9H977 334 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 FAM114A2Q9NRY5 505 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 IARS2Q9NSE4 1012 aaKnown RBP14.22□□□□□ -0.13
CLN3-213ENST00000565047 P4HTMQ9NXG6 502 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 PLAAQ9Y263 795 aa14.22□□□□□ -0.13
CLN3-213ENST00000565047 MASP2O00187 686 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 EIF3FO00303 357 aaPredicted RBP14.21□□□□□ -0.13
CLN3-213ENST00000565047 AHSGP02765 367 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 CATP04040 527 aaKnown RBP14.21□□□□□ -0.13
CLN3-213ENST00000565047 ERVK-10P10266 1014 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 ENO3P13929 434 aaPredicted RBP14.21□□□□□ -0.13
CLN3-213ENST00000565047 HSD17B2P37059 387 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 FOLR3P41439 243 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 RRADP55042 308 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 MLLT10P55197 1068 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 VSX2P58304 361 aaPredicted RBP14.21□□□□□ -0.13
CLN3-213ENST00000565047 RELAQ04206 551 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 CBLBQ13191 982 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 PPP1R7Q15435 360 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 TTLL9Q3SXZ7 439 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 DCAF10Q5QP82 559 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 KCNMB4Q86W47 210 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 CPNE9Q8IYJ1 553 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 RBMXL3Q8N7X1 1067 aaKnown RBP14.21□□□□□ -0.13
CLN3-213ENST00000565047 Q8NA96 180 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 PPFIBP2Q8ND30 876 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 C10orf90Q96M02 699 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 PWWP2AQ96N64 755 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 OR2A5Q96R48 311 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 FAM167BQ9BTA0 163 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 ACAT2Q9BWD1 397 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 ANKMY1Q9P2S6 941 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 NDOR1Q9UHB4 597 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 GPN3Q9UHW5 284 aaPredicted RBP14.21□□□□□ -0.13
CLN3-213ENST00000565047 PYCARDQ9ULZ3 195 aa14.21□□□□□ -0.13
CLN3-213ENST00000565047 ANKRD12Q6UB98 2062 aa14.21□□□□□ -0.14
CLN3-213ENST00000565047 A0A0J9YVX5 310 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 HYKKA2RU49 373 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 H0YGG7 62 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 SOCS6O14544 535 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 TTC4O95801 387 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 TSPAN12O95859 305 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 MMP11P24347 488 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 IMPA1P29218 277 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 CMPK1P30085 196 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 OR1D4P47884 311 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 EMP3P54852 163 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 ARF3P61204 181 aaPredicted RBP14.2□□□□□ -0.14
CLN3-213ENST00000565047 SNRPNP63162 240 aaKnown RBP14.2□□□□□ -0.14
CLN3-213ENST00000565047 ZXDCQ2QGD7 858 aaPredicted RBP14.2□□□□□ -0.14
CLN3-213ENST00000565047 FAM214AQ32MH5 1076 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 SPANXN3Q5MJ09 141 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 ICE2Q659A1 982 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 HIBCHQ6NVY1 386 aaPredicted RBP14.2□□□□□ -0.14
CLN3-213ENST00000565047 PIWIL4Q7Z3Z4 852 aaKnown RBP14.2□□□□□ -0.14
CLN3-213ENST00000565047 PCGF5Q86SE9 256 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 GALNT7Q86SF2 657 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 ZFYVE21Q9BQ24 234 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 ZNF552Q9H707 407 aaPredicted RBP14.2□□□□□ -0.14
CLN3-213ENST00000565047 STOX2Q9P2F5 926 aaPredicted RBP14.2□□□□□ -0.14
CLN3-213ENST00000565047 CTSFQ9UBX1 484 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 ASIC3Q9UHC3 531 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 ADAMTS6Q9UKP5 1117 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 ZNF451Q9Y4E5 1061 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 NBASA2RRP1 2371 aa14.2□□□□□ -0.14
CLN3-213ENST00000565047 IGLV3-12A0A075B6K2 115 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 A6NL46 340 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms