RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 FBXO42Q6P3S6 717 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 LAPTM4BQ86VI4 370 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 TMEM139Q8IV31 216 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 CCDC89Q8N998 374 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 COG1Q8WTW3 980 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 FAM136AQ96C01 138 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 VPS50Q96JG6 964 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 ACAT2Q9BWD1 397 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 FRMD8P1Q9BZ68 369 aaPredicted RBP16.09■□□□□ 0.17
CLN3-211ENST00000564091 RBSNQ9H1K0 784 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 TREX1Q9NSU2 369 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 PLA2G3Q9NZ20 509 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 ZNF282Q9UDV7 671 aaPredicted RBP16.09■□□□□ 0.17
CLN3-211ENST00000564091 KLK4Q9Y5K2 254 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 ABCA12Q86UK0 2595 aa16.09■□□□□ 0.17
CLN3-211ENST00000564091 MAP2K7O14733 419 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 HPP00738 406 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 NMBRP28336 390 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 FMO4P31512 558 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 MFAP5Q13361 173 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 KCTD19Q17RG1 926 aaPredicted RBP16.08■□□□□ 0.16
CLN3-211ENST00000564091 CTSL3PQ5NE16 218 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 ATG9BQ674R7 924 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 PRMT9Q6P2P2 845 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 RNF44Q7L0R7 432 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 RAB42Q8N4Z0 105 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 OTUD6BQ8N6M0 293 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 OR1N1Q8NGS0 311 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 HMGCLL1Q8TB92 370 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 C10orf90Q96M02 699 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 FOPNLQ96NB1 174 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 LMF1Q96S06 567 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 DPH7Q9BTV6 452 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 YIPF2Q9BWQ6 316 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 PAK5Q9P286 719 aa16.08■□□□□ 0.16
CLN3-211ENST00000564091 GOLGA8KD6RF30 607 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 H0YGG7 62 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 GOLGA8TH3BQL2 631 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 KPNA5O15131 536 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 ZG16O60844 167 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 FBLP22087 321 aaKnown RBP16.07■□□□□ 0.16
CLN3-211ENST00000564091 RPS3P23396 243 aaKnown RBP eCLIP16.07■□□□□ 0.166e-6■□□□□ 10.6
CLN3-211ENST00000564091 ARF3P61204 181 aaPredicted RBP16.07■□□□□ 0.16
CLN3-211ENST00000564091 ARG2P78540 354 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 ZRSR2Q15696 482 aaKnown RBP16.07■□□□□ 0.16
CLN3-211ENST00000564091 MUM1Q2TAK8 710 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 FAM180AQ6UWF9 173 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 CES3Q6UWW8 571 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 LRRC6Q86X45 466 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 TICAM1Q8IUC6 712 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 KBTBD2Q8IY47 623 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 SRRM1Q8IYB3 904 aaKnown RBP16.07■□□□□ 0.16
CLN3-211ENST00000564091 AMER2Q8N7J2 671 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 MAGEB10Q96LZ2 347 aaPredicted RBP16.07■□□□□ 0.16
CLN3-211ENST00000564091 BIRC8Q96P09 236 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 SLX1AQ9BQ83 275 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 SYNPO2LQ9H987 977 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 PTGFRNQ9P2B2 879 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 MRFAP1Q9Y605 127 aa16.07■□□□□ 0.16
CLN3-211ENST00000564091 OR2A25A4D2G3 310 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 NIPSNAP2O75323 286 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 F10P00742 488 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 ERVK-10P10266 1014 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 COX6A1P12074 109 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 ARNTP27540 789 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 CMPK1P30085 196 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 CCNFP41002 786 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 PER3P56645 1201 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 EEF1A2Q05639 463 aaKnown RBP16.06■□□□□ 0.16
CLN3-211ENST00000564091 PRTGQ2VWP7 1150 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.06■□□□□ 0.16
CLN3-211ENST00000564091 FAAH2Q6GMR7 532 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 SUSD1Q6UWL2 747 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 NDUFAF7Q7L592 441 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 FJX1Q86VR8 437 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 TXLNBQ8N3L3 684 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 MPP5Q8N3R9 675 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 BCORP1Q8N888 145 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 MAGEC3Q8TD91 643 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 BRIX1Q8TDN6 353 aaKnown RBP16.06■□□□□ 0.16
CLN3-211ENST00000564091 PSMF1Q92530 271 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 MFSD3Q96ES6 412 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 CABS1Q96KC9 395 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 ZFYVE21Q9BQ24 234 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 OLAHQ9NV23 265 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 SPATA7Q9P0W8 599 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 GALPQ9UBC7 116 aa16.06■□□□□ 0.16
CLN3-211ENST00000564091 IGLV3-12A0A075B6K2 115 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 NSG1A0A0A6YYJ2 146 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 ARHGAP10A1A4S6 786 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 JRKO75564 520 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 USP1O94782 785 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 VAPBO95292 243 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 CELA2AP08217 269 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 PRR35P0CG20 571 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 PRF1P14222 555 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 MGAT1P26572 445 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 SOX11P35716 441 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 EMP2P54851 167 aa16.05■□□□□ 0.16
CLN3-211ENST00000564091 KCNK10P57789 538 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms