RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SLC30A9Q6PML9 568 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 TMEM207Q6UWW9 146 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 CPLX4Q7Z7G2 160 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 SLC22A15Q8IZD6 547 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 AFAP1L2Q8N4X5 818 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 PHC3Q8NDX5 983 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 GPBAR1Q8TDU6 330 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 CKAP2Q8WWK9 683 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 TAAR9Q96RI9 348 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 UNKQ9C0B0 810 aaKnown RBP11.43□□□□□ -0.58
LDLR-212ENST00000560467 B3GNT4Q9C0J1 378 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 ADNPQ9H2P0 1102 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 EML4Q9HC35 981 aaKnown RBP11.43□□□□□ -0.58
LDLR-212ENST00000560467 ARL15Q9NXU5 204 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 NUDT4Q9NZJ9 180 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 TMEM9Q9P0T7 183 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 GALPQ9UBC7 116 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 LNPEPQ9UIQ6 1025 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 MED16Q9Y2X0 877 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 PRKAB1Q9Y478 270 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 ANGPTL3Q9Y5C1 460 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 ST14Q9Y5Y6 855 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 B3GALT1Q9Y5Z6 326 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 COLEC10Q9Y6Z7 277 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 LRP4O75096 1905 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 SCN8AQ9UQD0 1980 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 SLC5A10A0PJK1 596 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 GMNCA6NCL1 334 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 ZNF839A8K0R7 811 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 CDC7O00311 574 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 WISP3O95389 354 aaPredicted RBP11.42□□□□□ -0.58
LDLR-212ENST00000560467 SERPINE1P05121 402 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 NDUFS1P28331 727 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 SERPINB5P36952 375 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 HSD17B2P37059 387 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 ETV4P43268 484 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 PGGT1BP53609 377 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 GYS2P54840 703 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 ALDH18A1P54886 795 aaKnown RBP11.42□□□□□ -0.58
LDLR-212ENST00000560467 WDR4P57081 412 aaKnown RBP11.42□□□□□ -0.58
LDLR-212ENST00000560467 DNAJB13P59910 316 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 DMPKQ09013 629 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 BIRC2Q13490 618 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 NR1D2Q14995 579 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 CHI3L2Q15782 390 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 PFKFB4Q16877 469 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 TECRLQ5HYJ1 363 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 UNC5DQ6UXZ4 953 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 NAPRTQ6XQN6 538 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 PIWIL4Q7Z3Z4 852 aaKnown RBP11.42□□□□□ -0.58
LDLR-212ENST00000560467 IL22RA1Q8N6P7 574 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 CCNYL1Q8N7R7 359 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 GIMAP7Q8NHV1 300 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 LKAAEAR1Q8TD35 194 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 NAT14Q8WUY8 206 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 ASB11Q8WXH4 323 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 SCARF2Q96GP6 870 aaPredicted RBP11.42□□□□□ -0.58
LDLR-212ENST00000560467 CCDC138Q96M89 665 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 GPR78Q96P69 363 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 SLC30A3Q99726 388 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 PITPNM3Q9BZ71 974 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 TRIT1Q9H3H1 467 aaKnown RBP11.42□□□□□ -0.58
LDLR-212ENST00000560467 ZNF358Q9NW07 568 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 OXSMQ9NWU1 459 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 UTP6Q9NYH9 597 aaKnown RBP11.42□□□□□ -0.58
LDLR-212ENST00000560467 OARD1Q9Y530 152 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 PCDHGA3Q9Y5H0 932 aa11.42□□□□□ -0.58
LDLR-212ENST00000560467 SPTAN1Q13813 2472 aaKnown RBP11.42□□□□□ -0.58
LDLR-212ENST00000560467 USP9YO00507 2555 aaPredicted RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 TMEM114B3SHH9 223 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 TCP11X1B4DZS4 312 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 KLF11O14901 512 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 SGTAO43765 313 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 DUX1O43812 170 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 RAD1O60671 282 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 HSPA4LO95757 839 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 TSPAN12O95859 305 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 DHRS4L1P0CG22 281 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 THRAP10827 490 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 IMPDH1P20839 514 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 LSP1P33241 339 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 PREPP48147 710 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 PIK3CGP48736 1102 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CLCNKAP51800 687 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CBX1P83916 185 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CDKL1Q00532 357 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CTBSQ01459 385 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 DLG1Q12959 904 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 UBAP2LQ14157 1087 aaKnown RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 NFE2L1Q14494 772 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 OR4D1Q15615 310 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CLPPQ16740 277 aaPredicted RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 TTC19Q6DKK2 380 aaPredicted RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 SULT1C3Q6IMI6 304 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 METTL2BQ6P1Q9 378 aaKnown RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 ZNF761Q86XN6 746 aaPredicted RBP11.41□□□□□ -0.58
LDLR-212ENST00000560467 FAM129CQ86XR2 697 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 CRLF3Q8IUI8 442 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 LURAP1LQ8IV03 231 aa11.41□□□□□ -0.58
LDLR-212ENST00000560467 ZNF547Q8IVP9 402 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms