RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 OR9I1Q8NGQ6 314 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 SELENOMQ8WWX9 145 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 ASB12Q8WXK4 309 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 ABTB1Q969K4 478 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-229ENST00000557348 RMND5BQ96G75 393 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-229ENST00000557348 TMEM181Q9P2C4 612 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 STOX2Q9P2F5 926 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-229ENST00000557348 CD207Q9UJ71 328 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 FZD4Q9ULV1 537 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 AP3M1Q9Y2T2 418 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 RNF11Q9Y3C5 154 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 CCL27Q9Y4X3 112 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 KCNE2Q9Y6J6 123 aa12.28□□□□□ -0.44
SHMT2-229ENST00000557348 DOCK8Q8NF50 2099 aa12.27□□□□□ -0.44
SHMT2-229ENST00000557348 KMOO15229 486 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 RNASEH2AO75792 299 aaKnown RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 POP7O75817 140 aaKnown RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 C1orf105O95561 183 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 ZNF26P17031 533 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 TIE1P35590 1138 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 HTR6P50406 440 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 PFN3P60673 137 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 RPS14P62263 151 aaKnown RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 CDK3Q00526 305 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 IRF8Q02556 426 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 SGCGQ13326 291 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 TRIM25Q14258 630 aaKnown RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 FBXO43Q4G163 708 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 TCHHL1Q5QJ38 904 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 ZNF648Q5T619 568 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 FRG2Q64ET8 278 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 CAPN13Q6MZZ7 669 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 USP30Q70CQ3 517 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 GPR141Q7Z602 305 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 AMZ2Q86W34 360 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 THOC6Q86W42 341 aaKnown RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 HEATR4Q86WZ0 1026 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 CFAP206Q8IYR0 622 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 DPP10Q8N608 796 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 DCBLD1Q8N8Z6 715 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 TMEM102Q8N9M5 508 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-229ENST00000557348 STARD8Q92502 1023 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 CNBD2Q96M20 576 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 FRG2BQ96QU4 278 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 TEX101Q9BY14 249 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 WDR26Q9H7D7 661 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 CD320Q9NPF0 282 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 ZDHHC4Q9NPG8 344 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 ABCD2Q9UBJ2 740 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 SLC22A14Q9Y267 594 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 NCKAP1Q9Y2A7 1128 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 PIKFYVEQ9Y2I7 2098 aa12.27□□□□□ -0.45
SHMT2-229ENST00000557348 KCNE1BA0A087WTH5 132 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 TMEM202A6NGA9 273 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 IGLON5A6NGN9 336 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 H0YIV9 168 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 K7ESM1 405 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PLRG1O43660 514 aaKnown RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 HSD17B1P14061 328 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 SLC2A4P14672 509 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 ZNF8P17098 575 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 CAPN3P20807 821 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PBLDP30039 288 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 TRIM23P36406 574 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 HALP42357 657 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 CASP2P42575 452 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PREPP48147 710 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 RPL38P63173 70 aaKnown RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 DLX2Q07687 328 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 CHIT1Q13231 466 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 CEACAM7Q14002 265 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 ARHGAP19Q14CB8 494 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 LRIT3Q3SXY7 679 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 VPS26BQ4G0F5 336 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 IL23RQ5VWK5 629 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 GRHL2Q6ISB3 625 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 KRT80Q6KB66 452 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 NIPAL1Q6NVV3 410 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PDZD3Q86UT5 571 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 MFSD2AQ8NA29 543 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 RAD51AP1Q96B01 352 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 CMTM7Q96FZ5 175 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 GPATCH1Q9BRR8 931 aaKnown RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 C1QTNF2Q9BXJ5 285 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 EHD1Q9H4M9 534 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 BRF2Q9HAW0 419 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 ACSL5Q9ULC5 683 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PCDHGA11Q9Y5H2 935 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 MTCH2Q9Y6C9 303 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 TCF20Q9UGU0 1960 aaKnown RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PLK4O00444 970 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 SOX1O00570 391 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 FFAR3O14843 346 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 GPR42O15529 346 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PRMT3O60678 531 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 SEC22BO75396 215 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 IL6P05231 212 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 MYCLP1P12525 358 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms