RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 VPS9D1Q9Y2B5 631 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 TBC1D30Q9Y2I9 924 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 YIPF1Q9Y548 306 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 MYO7AQ13402 2215 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 FAM221AA4D161 298 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 PMS2P1A4D2B8 440 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 A8MT66 165 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 WRBO00258 174 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 GFRA2O00451 464 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 GMFGO60234 142 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 MITFO75030 526 aaPredicted RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 EFCAB14O75071 495 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ZMPSTE24O75844 475 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 PGM3O95394 542 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SOD2P04179 222 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SNRNP70P08621 437 aaKnown RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SRCP12931 536 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 HDCP19113 662 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 GALP22466 123 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 MAT2AP31153 395 aaKnown RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ZNF140P52738 457 aaPredicted RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 TLE2Q04725 743 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ZNF235Q14590 738 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 PTPRRQ15256 657 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ATAD3BQ5T9A4 648 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 TMEM198Q66K66 360 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 NIPAL1Q6NVV3 410 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SLC39A5Q6ZMH5 540 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ISCA2Q86U28 154 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 MICU2Q8IYU8 434 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ZNF786Q8N393 782 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 KDF1Q8NAX2 398 aaPredicted RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 GALNT11Q8NCW6 608 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 IFI44Q8TCB0 444 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 BLOC1S5Q8TDH9 187 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 C17orf62Q9BQA9 187 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 KLF16Q9BXK1 252 aaPredicted RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 TMEM168Q9H0V1 697 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 OR51B5Q9H339 312 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 RIMS4Q9H426 269 aaPredicted RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 POMKQ9H5K3 350 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 FAM96AQ9H5X1 160 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 LIN7BQ9HAP6 207 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 GPAMQ9HCL2 828 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 EVA1BQ9NVM1 165 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 NDE1Q9NXR1 346 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 EXTL2Q9UBQ6 330 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 TBC1D29Q9UFV1 150 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ZMYM5Q9UJ78 669 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 MID2Q9UJV3 735 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 STOML2Q9UJZ1 356 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ATXN7L1Q9ULK2 861 aaPredicted RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ST14Q9Y5Y6 855 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 NOTCH4Q99466 2003 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 TEX51A0A1B0GUA7 166 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 UBFD1O14562 309 aaKnown RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 GPR171O14626 319 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 KDELR3O43731 214 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 DHFRP00374 187 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SERPINF2P08697 491 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 FDXRP22570 491 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 RPIAP49247 311 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SUOXP51687 545 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 PRKAA2P54646 552 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 DNAJB13P59910 316 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ERVK-8P63133 956 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 DEFB103AP81534 67 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 KLF10Q13118 480 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 PRKAA1Q13131 559 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 KCNC3Q14003 757 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 AANATQ16613 207 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 AAK1Q2M2I8 961 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 TYSND1Q2T9J0 566 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 PPM1LQ5SGD2 360 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 GPR158Q5T848 1215 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SEL1L3Q68CR1 1132 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SEZ6L2Q6UXD5 910 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 RIPOR1Q6ZS17 1223 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SSX9Q7RTT3 188 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 SLC39A11Q8N1S5 342 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 MFSD2AQ8NA29 543 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 GPR150Q8NGU9 434 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 HMGCLL1Q8TB92 370 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 WFDC5Q8TCV5 224 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 MCOLN3Q8TDD5 553 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 AUTS2Q8WXX7 1259 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 TOP1MTQ969P6 601 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 PLD4Q96BZ4 506 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 NSMCE2Q96MF7 247 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 LENG8Q96PV6 779 aaPredicted RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 THTPAQ9BU02 230 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 ZNF334Q9HCZ1 680 aaPredicted RBP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 DAPK2Q9UIK4 370 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.97□□□□□ -1.61
TMEM260-210ENST00000556422 VWA7Q9Y334 891 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 WASF2Q9Y6W5 498 aa4.97□□□□□ -1.61
TMEM260-210ENST00000556422 A0A0U1RQS6 177 aa4.96□□□□□ -1.62
TMEM260-210ENST00000556422 LOC100653049A0A140TA62 436 aa4.96□□□□□ -1.62
TMEM260-210ENST00000556422 A0A1B0GVM2 712 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms