RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PGRP06401 933 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 HOXB2P14652 356 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 NPPBP16860 134 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 SDC1P18827 310 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 ATP6V1B2P21281 511 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 DRD1P21728 446 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 PON2Q15165 354 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 TMEM259Q4ZIN3 620 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 SPANXN4Q5MJ08 99 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 METRNLQ641Q3 311 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 CYP2R1Q6VVX0 501 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 PDSS2Q86YH6 399 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 DCUN1D3Q8IWE4 304 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 KRTCAP2Q8N6L1 136 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 CATSPER1Q8NEC5 780 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 OR8J3Q8NGG0 315 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 OR14C36Q8NHC7 312 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 GTF2H4Q92759 462 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 REPS1Q96D71 796 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 KCTD14Q9BQ13 255 aaPredicted RBP25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 C1QTNF7Q9BXJ2 289 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 EHD1Q9H4M9 534 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 COPS7BQ9H9Q2 264 aaPredicted RBP25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 ASF1AQ9Y294 204 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 TRPM6Q9BX84 2022 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 RPN2P04844 631 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 HTR1EP28566 365 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 MRPS21P82921 87 aaKnown RBP25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 TAP2Q03519 686 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 MAPKAPK3Q16644 382 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 ATG9BQ674R7 924 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 NOXRED1Q6NXP6 359 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 PLCD3Q8N3E9 789 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 NUDT8Q8WV74 236 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 NEIL2Q969S2 332 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 TESCQ96BS2 214 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 APOLD1Q96LR9 279 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 EFHD1Q9BUP0 239 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 CD207Q9UJ71 328 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 COL4A2P08572 1712 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 A0A1W2PQU0 124 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 PI15O43692 258 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 RNGTTO60942 597 aaKnown RBP25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 CAPNS1P04632 268 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 C7P10643 843 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 MYCLP1P12525 358 aaPredicted RBP25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 COL9A1P20849 921 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 GTF2A1P52655 376 aaPredicted RBP25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 DMPKQ09013 629 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 FXNQ16595 210 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 MED27Q6P2C8 311 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 LILRA2Q8N149 483 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 TFGQ92734 400 aaPredicted RBP25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 PKP2Q99959 881 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 EFCAB11Q9BUY7 163 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 SLC17A9Q9BYT1 436 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 PREBQ9HCU5 417 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 CCDC177Q9NQR7 707 aaPredicted RBP25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 RUVBL1Q9Y265 456 aaKnown RBP25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 SNX13Q9Y5W8 968 aa25.47■■□□□ 1.67
CCDC88C-205ENST00000553403 PRMT3O60678 531 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 C1GALT1C1LP0DN25 315 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 ADPRHP54922 357 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 GRSF1Q12849 480 aaKnown RBP eCLIP25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 MSANTD1Q6ZTZ1 278 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 TMPRSS11BQ86T26 416 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 HORMAD1Q86X24 394 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 ADCY4Q8NFM4 1077 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 SPDYE1Q8NFV5 336 aaPredicted RBP25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 OR7G3Q8NG95 312 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 CLHC1Q8NHS4 586 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 TMEM74Q96NL1 305 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 UHRF1Q96T88 793 aaPredicted RBP25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 COL25A1Q9BXS0 654 aaPredicted RBP25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 RMI1Q9H9A7 625 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 ACSL5Q9ULC5 683 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 AP3M1Q9Y2T2 418 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 OR1A2Q9Y585 309 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 PIAS3Q9Y6X2 628 aa25.46■■□□□ 1.67
CCDC88C-205ENST00000553403 ARPC2O15144 300 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 S100A3P33764 101 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 HSD17B2P37059 387 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 GRIA3P42263 894 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 ARHGAP19Q14CB8 494 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 AASDHQ4L235 1098 aaPredicted RBP25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 PAGE2BQ5JRK9 111 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 TJAP1Q5JTD0 557 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 RIMKLAQ8IXN7 391 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 TMEM102Q8N9M5 508 aaPredicted RBP25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 ASB12Q8WXK4 309 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 KLK6Q92876 244 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 SLCO4A1Q96BD0 722 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 PPM1MQ96MI6 270 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 HHIPQ96QV1 700 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 OR52E6Q96RD3 313 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 ARMC1Q9NVT9 282 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 EGFL7Q9UHF1 273 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 FZD4Q9ULV1 537 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 DTNAQ9Y4J8 743 aa25.45■■□□□ 1.67
CCDC88C-205ENST00000553403 ERGP11308 486 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms