RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 GPR42O15529 346 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 SRPX2O60687 465 aaPredicted RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 MYBL2P10244 700 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 COMTP21964 271 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 FBLP22087 321 aaKnown RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 SLC1A1P43005 524 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 ART1P52961 327 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 CSE1LP55060 971 aaKnown RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 PLOD1Q02809 727 aaPredicted RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 GRB7Q14451 532 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 ASTE1Q2TB18 679 aaPredicted RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 ZNF766Q5HY98 468 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 OR4N4Q8N0Y3 316 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 MMP21Q8N119 569 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 OR2L8Q8NGY9 312 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 THAP3Q8WTV1 239 aaPredicted RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 CDKN2AIPNLQ96HQ2 116 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 TREX2Q9BQ50 279 aaPredicted RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 TSPAN10Q9H1Z9 355 aaPredicted RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 STMN3Q9NZ72 180 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 ZC3H7BQ9UGR2 993 aaKnown RBP12.12□□□□□ -0.47
SCAF11-208ENST00000546534 CACNA1CQ13936 2221 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 TARM1B6A8C7 271 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 FAM227AF5H4B4 570 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 H7C0C1 242 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 FANCGO15287 622 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 SPOPO43791 374 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 NRP2O60462 931 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 CD99P14209 185 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ATP5OP48047 213 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ZNF33BQ06732 778 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 PRPSAP1Q14558 356 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ITIH4Q14624 930 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 PCOLCEQ15113 449 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 KRTCAP3Q53RY4 240 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 DNAJC21Q5F1R6 531 aaKnown RBP12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ANKRD20A2Q5SQ80 823 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ANKRD20A1Q5TYW2 823 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ANKRD20A3Q5VUR7 823 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 NEK10Q6ZWH5 1172 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 VRK3Q8IV63 474 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 CCDC50Q8IVM0 306 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 RHOT2Q8IXI1 618 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 SLC22A15Q8IZD6 547 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ARMC2Q8NEN0 867 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 CFAP61Q8NHU2 1237 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ZUFSPQ96AP4 578 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 IQCDQ96DY2 449 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 C10orf90Q96M02 699 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 GPR137Q96N19 417 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 TBL1YQ9BQ87 522 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 TMEM121Q9BTD3 319 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ZNF700Q9H0M5 742 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 TRPC4Q9UBN4 977 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 ABCA2Q9BZC7 2435 aa12.11□□□□□ -0.47
SCAF11-208ENST00000546534 SPG11Q96JI7 2443 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 A0A0J9YVX5 310 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 OR51F1A6NGY5 319 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 ZNHIT1O43257 154 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 EIF2S1P05198 315 aaKnown RBP12.1□□□□□ -0.47
SCAF11-208ENST00000546534 HEXBP07686 556 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 OR56A5P0C7T3 313 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 TPH1P17752 444 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 PSMB5P28074 263 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 IQCB1Q15051 598 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 LONRF1Q17RB8 773 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 MUM1Q2TAK8 710 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 PACS1Q6VY07 963 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 C3P1Q6ZMU1 363 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 AGAP11Q8TF27 550 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 IMMP1LQ96LU5 166 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 MIPEPQ99797 713 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 YIPF2Q9BWQ6 316 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 HEMGNQ9BXL5 484 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 FAM169AQ9Y6X4 670 aa12.1□□□□□ -0.47
SCAF11-208ENST00000546534 CPAMD8Q8IZJ3 1885 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 LOC102723996A0A087X1L8 192 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 A0A1B0GTL3 188 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 A8MUI8 341 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 NPIPA5E9PKD4 350 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 RASGRF2O14827 1237 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 TTI1O43156 1089 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 PSTPIP1O43586 416 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 OR1I1O60431 355 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 ZRANB2O95218 330 aaKnown RBP eCLIP12.09□□□□□ -0.47
SCAF11-208ENST00000546534 FKBP9O95302 570 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 ICAM2P13598 275 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 CCR7P32248 378 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 EFNA3P52797 238 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 UBASH3AP57075 661 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 ALDH6A1Q02252 535 aaKnown RBP12.09□□□□□ -0.47
SCAF11-208ENST00000546534 HSPA14Q0VDF9 509 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 PRTGQ2VWP7 1150 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 BBS12Q6ZW61 710 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 DCUN1D3Q8IWE4 304 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 AMER3Q8N944 861 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 CA5BP1Q8WTZ4 195 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 STYXQ8WUJ0 223 aa12.09□□□□□ -0.47
SCAF11-208ENST00000546534 SDCCAG3Q96C92 435 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms