RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	AMIGO1	Q86WK6	493 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	LRRC6	Q86X45	466 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	SLC22A15	Q8IZD6	547 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	ARHGEF39	Q8N4T4	335 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	OR4E2	Q8NGC2	313 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	OR5K2	Q8NHB8	316 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	STARD8	Q92502	1023 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	PANX3	Q96QZ0	392 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	KIFC1	Q9BW19	673 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	SEMA4C	Q9C0C4	833 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	ADNP	Q9H2P0	1102 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	FANCE	Q9HB96	536 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	SYTL2	Q9HCH5	934 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	CHRAC1	Q9NRG0	131 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	SOHLH2	Q9NX45	425 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	CGGBP1	Q9UFW8	167 aa	Predicted RBP	7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	POLG2	Q9UHN1	485 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	GNPTG	Q9UJJ9	305 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	ANAPC5	Q9UJX4	755 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	RNF112	Q9ULX5	631 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	ICK	Q9UPZ9	632 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	ASF1A	Q9Y294	204 aa		7.43	□□□□□ -1.22
SNHG1-223	ENST00000545440	BOD1L1	Q8NFC6	3051 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	GCN1	Q92616	2671 aa	Known RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	GOLGA6L10	A0A0M3HER8	536 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	C2orf74	A8MZ97	194 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	C21orf140	B9A014	251 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440		H3BS24	57 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	BTN3A3	O00478	584 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CES2	O00748	559 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	PRMT5	O14744	637 aa	Predicted RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CD3EAP	O15446	510 aa	Known RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	PROC	P04070	461 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	RPN2	P04844	631 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	APOA4	P06727	396 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	OGN	P20774	298 aa	Known RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CDH3	P22223	829 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	RPS3	P23396	243 aa	Known RBP eCLIP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	MGAT1	P26572	445 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	NMBR	P28336	390 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TPP2	P29144	1249 aa	Predicted RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	PRDX3	P30048	256 aa	Known RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	DLST	P36957	453 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	FNTA	P49354	379 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CYP4F2	P78329	520 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CRADD	P78560	199 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	SARNP	P82979	210 aa	Known RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	GPS1	Q13098	491 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TMED2	Q15363	201 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TBR1	Q16650	682 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TYSND1	Q2T9J0	566 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	RNF187	Q5TA31	235 aa	Predicted RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	KIAA0930	Q6ICG6	404 aa	Predicted RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	PWWP2B	Q6NUJ5	590 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TTC27	Q6P3X3	843 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	SPESP1	Q6UW49	350 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	UNC5D	Q6UXZ4	953 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	ZDHHC13	Q8IUH4	622 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	SCUBE1	Q8IWY4	988 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TBC1D21	Q8IYX1	336 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	ADGRF3	Q8IZF5	1079 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	UNC5B	Q8IZJ1	945 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	OR5AR1	Q8NGP9	310 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	ACTRT1	Q8TDG2	376 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	ASZ1	Q8WWH4	475 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	SEC14L1	Q92503	715 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	UBE2F	Q969M7	185 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	ZNF501	Q96CX3	271 aa	Predicted RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	ELMO2	Q96JJ3	720 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440		Q96M66	194 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	LRFN5	Q96NI6	719 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	OSBPL9	Q96SU4	736 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CARD6	Q9BX69	1037 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	AP1M1	Q9BXS5	423 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TWSG1	Q9GZX9	223 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CHRNA10	Q9GZZ6	450 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	XAB2	Q9HCS7	855 aa	Known RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	LHX9	Q9NQ69	397 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	SYBU	Q9NX95	663 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	OR6C2	Q9NZP2	312 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	MARCH4	Q9P2E8	410 aa	Predicted RBP	7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	IL17B	Q9UHF5	180 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	DUSP13	Q9UII6	198 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TUBD1	Q9UJT1	453 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	KCND3	Q9UK17	655 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CROT	Q9UKG9	612 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	CDYL	Q9Y232	598 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	EMC9	Q9Y3B6	208 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	PCDHGA6	Q9Y5G7	932 aa		7.42	□□□□□ -1.22
SNHG1-223	ENST00000545440	TCRBV7S3A2	A0A539	114 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	PIPSL	A2A3N6	862 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	SLC9B1P1	A6NJY1	282 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440		B8ZZF3	427 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	KPNA5	O15131	536 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	PFDN6	O15212	129 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	KIF5C	O60282	957 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	PHF2	O75151	1096 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	GPC4	O75487	556 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	SCRG1	O75711	98 aa		7.41	□□□□□ -1.22
SNHG1-223	ENST00000545440	TMEM63A	O94886	807 aa		7.41	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms