RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CDR2Q01850 454 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 OGDHQ02218 1023 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 NIPAL4Q0D2K0 466 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 PTP4A2Q12974 167 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 FASTKQ14296 549 aaKnown RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 BECN1Q14457 450 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 MAPKAPK3Q16644 382 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 TPD52L1Q16890 204 aaPredicted RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 C21orf62-AS1Q17RA5 79 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 FILIP1LQ4L180 1135 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 HSP90AA4PQ58FG1 418 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 HP1BP3Q5SSJ5 553 aaPredicted RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 SHEQ5VZ18 495 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 ATG9BQ674R7 924 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 PDPK2PQ6A1A2 396 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 LRFN4Q6PJG9 635 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 KDELC1Q6UW63 502 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 PAMR1Q6UXH9 720 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 SPATC1Q76KD6 591 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 COX15Q7KZN9 410 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 GALNTL5Q7Z4T8 443 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 FGD2Q7Z6J4 655 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 DAAM2Q86T65 1068 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 RAVER1Q8IY67 606 aaKnown RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 ADGRF3Q8IZF5 1079 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 BEST3Q8N1M1 668 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 TMEM151AQ8N4L1 468 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 LILRA3Q8N6C8 439 aaPredicted RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 FAM98AQ8NCA5 519 aaKnown RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 C3orf20Q8ND61 904 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 MYRIPQ8NFW9 859 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 OR52E1Q8NGJ3 308 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 OR5M3Q8NGP4 307 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 FAM57AQ8TBR7 257 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 STT3BQ8TCJ2 826 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 TMEM125Q96AQ2 219 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 FKBP10Q96AY3 582 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 MBD6Q96DN6 1003 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 RMDN2Q96LZ7 410 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 Q96MF0 132 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 LYSMD1Q96S90 227 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 PEBP4Q96S96 227 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 PCDHB18PQ96TA0 734 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 HGH1Q9BTY7 390 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 ADGRE3Q9BY15 652 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 PITPNM3Q9BZ71 974 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF304Q9HCX3 659 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 DMRT3Q9NQL9 472 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 RAD18Q9NS91 495 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 CUTCQ9NTM9 273 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 EURLQ9NYK6 297 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 CRIM1Q9NZV1 1036 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 FRRS1LQ9P0K9 344 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 STOX2Q9P2F5 926 aaPredicted RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 TEKT2Q9UIF3 430 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 NXT1Q9UKK6 140 aaKnown RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 ACSL5Q9ULC5 683 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 PCDHB10Q9UN67 800 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 PLCL2Q9UPR0 1127 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 TDRKHQ9Y2W6 561 aaKnown RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF711Q9Y462 761 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 L3MBTL1Q9Y468 752 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 ASB1Q9Y576 335 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 HEBP2Q9Y5Z4 205 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 CHD3Q12873 2000 aaKnown RBP4.54□□□□□ -1.68
LIMS1-214ENST00000542845 NBEAL1Q6ZS30 2694 aa4.54□□□□□ -1.68
LIMS1-214ENST00000542845 COL6A5A8TX70 2615 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ELOA3CA0A087WX78 387 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 IGHV1-45A0A0A0MS14 117 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 GOLGA6L4A6NEF3 574 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 MGAT4DA6NG13 374 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TRIM64A6NGJ6 449 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TRIM64BA6NI03 449 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ELOA3DA6NLF2 546 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 A6NNC1 897 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TMCO5BA8MYB1 307 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 IDSB3KWA1 339 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 EIF3CLB5ME19 914 aaKnown RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 IFRD1O00458 451 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 RASGRF2O14827 1237 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 AURKAO14965 403 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 CRLF1O75462 422 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 IFNA2P01563 188 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 HLA-DQB2P05538 268 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 HEXBP07686 556 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ARAFP10398 606 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 COX6A1P12074 109 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF24P17028 368 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 FDXRP22570 491 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 MIPP30301 263 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 CD96P40200 585 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 MAP2K3P46734 347 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 GABRA4P48169 554 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 HCAR3P49019 387 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 RPL26P61254 145 aaKnown RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 DCAF7P61962 342 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 RUNX1T1Q06455 604 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TUBA3CQ13748 450 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 DPYSQ14117 519 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms