RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TMC5Q6UXY8 1006 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 TNIP2Q8NFZ5 429 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 OR2T12Q8NG77 320 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 CSGALNACT1Q8TDX6 532 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 OSBPL6Q9BZF3 934 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 SFXN1Q9H9B4 322 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 OAZ3Q9UMX2 235 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 COQ6Q9Y2Z9 468 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 PCDHB14Q9Y5E9 798 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 FAM220BPB1ANY3 271 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 E7EQ34 232 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 RECQL5O94762 991 aaPredicted RBP13.36□□□□□ -0.27
RTN3-210ENST00000540798 ADRB3P13945 408 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 HSD3B1P14060 373 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 HSD3B2P26439 372 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 PDHA2P29803 388 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 HNF4AP41235 474 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 BDKRB1P46663 353 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 DOC2AQ14183 400 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 ZNF234Q14588 700 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 PYCR3Q53H96 274 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 GALNT15Q8N3T1 639 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 FGF13Q92913 245 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 FOXJ1Q92949 421 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 NUS1Q96E22 293 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 CHID1Q9BWS9 393 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 BRF2Q9HAW0 419 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 PDE4DIPQ5VU43 2346 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 GRXCR1A8MXD5 290 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 K7ESM1 405 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 UPK1AO00322 258 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 TPST1O60507 370 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 PRMT3O60678 531 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 C6P13671 934 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 IRF8Q02556 426 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 FAM109BQ6ICB4 259 aaPredicted RBP13.35□□□□□ -0.27
RTN3-210ENST00000540798 SFTPA1Q8IWL2 248 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 NCSTNQ92542 709 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 ITCHQ96J02 903 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 NTN4Q9HB63 628 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 GPRC5BQ9NZH0 403 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.35□□□□□ -0.27
RTN3-210ENST00000540798 SMIM31A0A1B0GVY4 71 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 PDLIM1O00151 329 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 PLOD2O00469 737 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 C1orf105O95561 183 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 RAP2AP10114 183 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 S100A3P33764 101 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 CCR3P51677 355 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 PDGFRLQ15198 375 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 SLC36A3Q495N2 470 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 GTDC1Q4AE62 458 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 XKR6Q5GH73 641 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 OR10A6Q8NH74 314 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 WDR34Q96EX3 536 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 PREBQ9HCU5 417 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 OLAHQ9NV23 265 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 RHBDL2Q9NX52 303 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 SLC16A8O95907 504 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 LDLRP01130 860 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 MYF6P23409 242 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 FSHRP23945 695 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 RPL5P46777 297 aaKnown RBP13.35□□□□□ -0.27
RTN3-210ENST00000540798 PLIN5Q00G26 463 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 NAE1Q13564 534 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 RNF175Q8N4F7 328 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 TERB1Q8NA31 727 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 PPP1R16AQ96I34 528 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 SLX1AQ9BQ83 275 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 ZCCHC2Q9C0B9 1178 aaKnown RBP13.35□□□□□ -0.27
RTN3-210ENST00000540798 RMND5AQ9H871 391 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 CARS2Q9HA77 564 aaKnown RBP13.35□□□□□ -0.27
RTN3-210ENST00000540798 GDE1Q9NZC3 331 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 NDUFA13Q9P0J0 144 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 HCN2Q9UL51 889 aa13.35□□□□□ -0.27
RTN3-210ENST00000540798 C17orf113A0A1B0GUU1 675 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 SCELO95171 688 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 PRPS1L1P21108 318 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 DPY19L1Q2PZI1 675 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 ERN2Q76MJ5 926 aaKnown RBP13.34□□□□□ -0.27
RTN3-210ENST00000540798 ZNF547Q8IVP9 402 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 APOLD1Q96LR9 279 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 TSSK3Q96PN8 268 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 HDAC8Q9BY41 377 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 PNPLA3Q9NST1 481 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 VPS29Q9UBQ0 182 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 ELOVL7A1L3X0 281 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 SCN2BO60939 215 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 CLPTM1O96005 669 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 RETP07949 1114 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 IL1RNP18510 177 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 SOX11P35716 441 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 OPRD1P41143 372 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 GPR155Q7Z3F1 870 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 GPR149Q86SP6 731 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 LRRC56Q8IYG6 542 aaPredicted RBP13.34□□□□□ -0.27
RTN3-210ENST00000540798 MICU2Q8IYU8 434 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 METTL25Q8N6Q8 603 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 EGLN2Q96KS0 407 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 FOPNLQ96NB1 174 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms