RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 RPS3P23396 243 aaKnown RBP eCLIP12.08□□□□□ -0.481e-6■■■□□ 16.8
CLSTN3-208ENST00000538933 SERPINB8P50452 374 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 BMPR2Q13873 1038 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 ELOAQ14241 798 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 USP10Q14694 798 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 HSP90B2PQ58FF3 399 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 ZNF648Q5T619 568 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 UGT3A1Q6NUS8 523 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 SPNS3Q6ZMD2 512 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 TMEM26Q6ZUK4 368 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 RAPH1Q70E73 1250 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 CHST15Q7LFX5 561 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 TDRPQ86YL5 185 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 TRAPPC5Q8IUR0 188 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 ST6GALNAC3Q8NDV1 305 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 DCAKDQ8WVC6 231 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 LPGAT1Q92604 370 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 MTBPQ96DY7 904 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 TSPAN17Q96FV3 270 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 NDNQ99608 321 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 STN1Q9H668 368 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 RUBCNLQ9H714 662 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 GPR83Q9NYM4 423 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 SCHIP1Q9P0W5 487 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 C5AR2Q9P296 337 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 CTNNAL1Q9UBT7 734 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 SLC39A10Q9ULF5 831 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 COPG1Q9Y678 874 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 OR2AG2A6NM03 316 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 OR5K4A6NMS3 321 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 TRIM49D1C9J1S8 452 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 PRSS44E7EML9 344 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 ATP8B1O43520 1251 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 AP2A2O94973 939 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 FTH1P02794 183 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 STMN1P16949 149 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 TYK2P29597 1187 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 PBLDP30039 288 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 CA5AP35218 305 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 PDAP1Q13442 181 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 ZNF789Q5FWF6 425 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 HECTD2Q5U5R9 776 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 CACHD1Q5VU97 1274 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 FAM69BQ5VUD6 431 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 LCN10Q6JVE6 187 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 TMEM220Q6QAJ8 160 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 CRTC3Q6UUV7 619 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 IGFL3Q6UXB1 125 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 ADGRG6Q86SQ4 1221 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 SLC38A9Q8NBW4 561 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 SLC41A2Q96JW4 573 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 ZNF514Q96K75 400 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 PKNOX2Q96KN3 472 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 TSNARE1Q96NA8 513 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 AARSD1Q9BTE6 412 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 DHRS4Q9BTZ2 278 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 TMEM109Q9BVC6 243 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 TAS2R13Q9NYV9 303 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 ZNF624Q9P2J8 865 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 ATXN10Q9UBB4 475 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 EPHA6Q9UF33 1036 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 ITGB1BP2Q9UKP3 347 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 MTO1Q9Y2Z2 717 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 NFS1Q9Y697 457 aa12.07□□□□□ -0.48
CLSTN3-208ENST00000538933 DOCK10Q96BY6 2186 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 ANKRD12Q6UB98 2062 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 GPR89AB7ZAQ6 455 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 MAP2K7O14733 419 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 SNX2O60749 519 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 RASSF9O75901 435 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 GPR89BP0CG08 455 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 GABRB3P28472 473 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 GCAP28676 217 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 SLC19A1P41440 591 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 ADARP55265 1226 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 PER3P56645 1201 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 POU4F1Q01851 419 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 KCNAB1Q14722 419 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 SYTL3Q4VX76 610 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 RBM20Q5T481 1227 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 MED25Q71SY5 747 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 LRRTM4Q86VH4 590 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 ZBTB2Q8N680 514 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 CLDN19Q8N6F1 224 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 TMEM102Q8N9M5 508 aaPredicted RBP12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 ELMO1Q92556 727 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 RSC1A1Q92681 617 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 FAM136AQ96C01 138 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 GPR22Q99680 433 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 P2RY12Q9H244 342 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 RMI1Q9H9A7 625 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 PDE7BQ9NP56 450 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 FAM8A1Q9UBU6 413 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 TRMT6Q9UJA5 497 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 RARRES3Q9UL19 164 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 TMPRSS11EQ9UL52 423 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 OSGIN2Q9Y236 505 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 VWA7Q9Y334 891 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 PCDHGA10Q9Y5H3 936 aa12.06□□□□□ -0.48
CLSTN3-208ENST00000538933 PRSS21Q9Y6M0 314 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms