RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TRIM39Q9HCM9 518 aa6.53□□□□□ -1.36
USP28-207ENST00000538475 PAK6Q9NQU5 681 aaPredicted RBP6.53□□□□□ -1.36
USP28-207ENST00000538475 ZNF302Q9NR11 478 aa6.53□□□□□ -1.36
USP28-207ENST00000538475 DCAF13Q9NV06 445 aaKnown RBP6.53□□□□□ -1.36
USP28-207ENST00000538475 FNIP2Q9P278 1114 aa6.53□□□□□ -1.36
USP28-207ENST00000538475 HECAQ9UBI9 543 aaPredicted RBP6.53□□□□□ -1.36
USP28-207ENST00000538475 SIX4Q9UIU6 781 aa6.53□□□□□ -1.36
USP28-207ENST00000538475 RIMKLBQ9ULI2 386 aa6.53□□□□□ -1.36
USP28-207ENST00000538475 PCDHB14Q9Y5E9 798 aa6.53□□□□□ -1.36
USP28-207ENST00000538475 PCDHGB3Q9Y5G1 929 aa6.53□□□□□ -1.36
USP28-207ENST00000538475 GMPPBQ9Y5P6 360 aa6.53□□□□□ -1.36
USP28-207ENST00000538475 IQCMA0A1B0GVH7 501 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ELOVL7A1L3X0 281 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 SH3D21A4FU49 640 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 H3BQ06 376 aaPredicted RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 TRIM77I1YAP6 450 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 NFIBO00712 420 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 GABRDO14764 452 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 SLC30A4O14863 429 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 DSCR3O14972 297 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 PIP5K1BO14986 540 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 MPZL2O60487 215 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 HCN1O60741 890 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 LEFTY1O75610 366 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 OR2B3O76000 313 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 PGLSO95336 258 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 CD4P01730 458 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 CDK1P06493 297 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 TGFB3P10600 412 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 MYCLP12524 364 aaPredicted RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 CD9P21926 228 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ENPP1P22413 925 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 MYL9P24844 172 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 GTF2E2P29084 291 aaKnown RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 DNAJA1P31689 397 aaKnown RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 AKT1P31749 480 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 KRT20P35900 424 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 PIGAP37287 484 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 TNFSF9P41273 254 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ZFP36L2P47974 494 aaKnown RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 BTG1P62324 171 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 DAB2P98082 770 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 MAB21L1Q13394 359 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 RIN1Q13671 783 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 RAPSNQ13702 412 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 EFR3AQ14156 821 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 CSHL1Q14406 222 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 CAPRIN1Q14444 709 aaKnown RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 IRF3Q14653 427 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 QPRTQ15274 297 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 TIGD6Q17RP2 521 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 BCL7AQ4VC05 210 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 HSD17B12Q53GQ0 312 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ALFQ53S48 1182 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 RABL3Q5HYI8 236 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 NOL9Q5SY16 702 aaKnown RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 SLC35F1Q5T1Q4 408 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 RNLSQ5VYX0 342 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 CPZQ66K79 652 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ANKS6Q68DC2 871 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 SPESP1Q6UW49 350 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 MSANTD1Q6ZTZ1 278 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 NRARPQ7Z6K4 114 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 DDX53Q86TM3 631 aaKnown RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 ISCA2Q86U28 154 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 IFNEQ86WN2 208 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 SNX29P2Q8IUI4 249 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 NIM1KQ8IY84 436 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 KCT2Q8NC54 265 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 DENND6BQ8NEG7 585 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 DUSP18Q8NEJ0 188 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ZNF548Q8NEK5 533 aaPredicted RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 ACVR1CQ8NER5 493 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 OR8K5Q8NH50 307 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 LILRB1Q8NHL6 650 aaPredicted RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 UBA3Q8TBC4 463 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 BTN2A2Q8WVV5 523 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 FAM151AQ8WW52 585 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ASB15Q8WXK1 588 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 PGAP3Q96FM1 320 aaPredicted RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 HPDLQ96IR7 371 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 HRASLS5Q96KN8 279 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 C12orf42Q96LP6 360 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 C3orf30Q96M34 536 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ZNF583Q96ND8 569 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 TRNT1Q96Q11 434 aaKnown RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 NPY6RQ99463 290 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ZBTB18Q99592 522 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 SDHCQ99643 169 aaPredicted RBP6.52□□□□□ -1.37
USP28-207ENST00000538475 TBL1YQ9BQ87 522 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 DUSP23Q9BVJ7 150 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 GABARAPL3Q9BY60 117 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ALOXE3Q9BYJ1 711 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.52□□□□□ -1.37
USP28-207ENST00000538475 NT5DC2Q9H857 520 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 RNF121Q9H920 327 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 SMURF2Q9HAU4 748 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 IL1RL2Q9HB29 575 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 MID1IP1Q9NPA3 183 aa6.52□□□□□ -1.37
USP28-207ENST00000538475 ZNF277Q9NRM2 450 aaPredicted RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms