RNA–Protein interactions for RNA: ENST00000534532.6

NCAPD3-213, Transcript of non-SMC condensin II complex subunit D3, human

TSL 2

Gene NCAPD3, Length 5,539 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCAPD3-213	ENST00000534532	TSC22D4	Q9Y3Q8	395 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PLK4	O00444	970 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	TRIM3	O75382	744 aa	Predicted RBP	15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	HRH2	P25021	359 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	SLC26A3	P40879	764 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	YAP1	P46937	504 aa	Known RBP	15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	ARCN1	P48444	511 aa	Known RBP	15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	HNRNPK	P61978	463 aa	Known RBP eCLIP	15.34	■□□□□ 0.05	5e-6	■■■■□ 19.6
NCAPD3-213	ENST00000534532	SLC35G1	Q2M3R5	365 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PLEKHS1	Q5SXH7	462 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PQLC1	Q8N2U9	271 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	NAT8L	Q8N9F0	302 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	FAM13C	Q8NE31	585 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PNPLA2	Q96AD5	504 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	APOBEC3B	Q9UH17	382 aa	Known RBP	15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	TESMIN	Q9Y4I5	508 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	KLHL33	A6NCF5	533 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	GNB5	O14775	395 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	LSM3	P62310	102 aa	Known RBP	15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	KCNC3	Q14003	757 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	TMEM44	Q2T9K0	475 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	C7orf57	Q8NEG2	295 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	COX4I2	Q96KJ9	171 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PADI2	Q9Y2J8	665 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	LRRC37A3	O60309	1634 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	BCKDK	O14874	412 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	MSX2	P35548	267 aa	Predicted RBP	15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	STC1	P52823	247 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	TRAP1	Q12931	704 aa	Known RBP	15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	CLNK	Q7Z7G1	428 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	TRAM1L1	Q8N609	369 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	TMED5	Q9Y3A6	229 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	FADS3	Q9Y5Q0	445 aa		15.34	■□□□□ 0.05
NCAPD3-213	ENST00000534532	CPSF4L	A6NMK7	179 aa	Known RBP	15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	TP73	O15350	636 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	LDB2	O43679	373 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	OAZ2	O95190	189 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	VIPR2	P41587	438 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	NRL	P54845	237 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	NR1H2	P55055	460 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	CRELD2	Q6UXH1	353 aa	Predicted RBP	15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	C14orf80	Q86SX3	495 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	LENG8	Q96PV6	779 aa	Predicted RBP	15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PAPSS2	O95340	614 aa	Predicted RBP	15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	C5AR1	P21730	350 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	DSTN	P60981	165 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	XIAP	P98170	497 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	SLC25A11	Q02978	314 aa	Known RBP	15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	SOX4	Q06945	474 aa	Predicted RBP	15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	ATP1A4	Q13733	1029 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	SCARB2	Q14108	478 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PON2	Q15165	354 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	TLR1	Q15399	786 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	ZZZ3	Q8IYH5	903 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	GPR65	Q8IYL9	337 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	CDK15	Q96Q40	435 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	ACTL8	Q9H568	366 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	MAGEE1	Q9HCI5	957 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	NLE1	Q9NVX2	485 aa	Predicted RBP	15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	SAGE1	Q9NXZ1	904 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PCDHGB7	Q9Y5F8	929 aa		15.33	■□□□□ 0.05
NCAPD3-213	ENST00000534532	PCDHGA12	O60330	932 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	HMGCS1	Q01581	520 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	PTCHD3	Q3KNS1	767 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	DNM1P34	Q6PK57	102 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	SMARCD3	Q6STE5	483 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	ISLR2	Q6UXK2	745 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	ADGRD2	Q7Z7M1	963 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	OR10T2	Q8NGX3	314 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	YIPF4	Q9BSR8	244 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	C12orf65	Q9H3J6	166 aa	Known RBP	15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	CLK4	Q9HAZ1	481 aa	Known RBP	15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	C2orf78	A6NCI8	922 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	PFKL	P17858	780 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	IL12RB1	P42701	662 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	CLCN4	P51793	760 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	CCDC92	Q53HC0	331 aa	Predicted RBP	15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	GLYATL1	Q969I3	302 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	SLC35A5	Q9BS91	424 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	C1QTNF1	Q9BXJ1	281 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	DSN1	Q9H410	356 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	MCUB	Q9NWR8	336 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	LYAR	Q9NX58	379 aa	Known RBP	15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	TPST2	O60704	377 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	STC2	O76061	302 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	GK	P32189	559 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	RAB25	P57735	213 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	PPP2R2B	Q00005	443 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	UBAP2	Q5T6F2	1119 aa	Known RBP	15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	OR56A1	Q8NGH5	318 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	CLPTM1L	Q96KA5	538 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	COL21A1	Q96P44	957 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	CXorf56	Q9H5V9	222 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	FARSB	Q9NSD9	589 aa	Known RBP	15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	DKKL1	Q9UK85	242 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	AP4B1	Q9Y6B7	739 aa		15.33	■□□□□ 0.04
NCAPD3-213	ENST00000534532	ACADL	P28330	430 aa		15.32	■□□□□ 0.04
NCAPD3-213	ENST00000534532	GRIA1	P42261	906 aa		15.32	■□□□□ 0.04
NCAPD3-213	ENST00000534532	PTDSS1	P48651	473 aa	Known RBP	15.32	■□□□□ 0.04
NCAPD3-213	ENST00000534532	STK19	P49842	368 aa	Predicted RBP	15.32	■□□□□ 0.04

Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms