RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 P2RY12Q9H244 342 aa3.8□□□□□ -1.8
CD44-215ENST00000525241 FZD8Q9H461 694 aa3.8□□□□□ -1.8
CD44-215ENST00000525241 ERVMER34-1Q9H9K5 563 aa3.8□□□□□ -1.8
CD44-215ENST00000525241 BARHL2Q9NY43 387 aa3.8□□□□□ -1.8
CD44-215ENST00000525241 OR6C2Q9NZP2 312 aa3.8□□□□□ -1.8
CD44-215ENST00000525241 EPHA6Q9UF33 1036 aa3.8□□□□□ -1.8
CD44-215ENST00000525241 PPP2R2CQ9Y2T4 447 aa3.8□□□□□ -1.8
CD44-215ENST00000525241 SNED1Q8TER0 1413 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 TCERG1O14776 1098 aaKnown RBP3.79□□□□□ -1.8
CD44-215ENST00000525241 GSRP00390 522 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 HSP90AA1P07900 732 aaKnown RBP3.79□□□□□ -1.8
CD44-215ENST00000525241 RNF224P0DH78 156 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 HSPA4P34932 840 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 LEPRP48357 1165 aaKnown RBP3.79□□□□□ -1.8
CD44-215ENST00000525241 ZNF273Q14593 569 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 CTU2Q2VPK5 515 aaKnown RBP3.79□□□□□ -1.8
CD44-215ENST00000525241 LCN1P1Q5VSP4 162 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 OR4A47Q6IF82 309 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 SLC25A47Q6Q0C1 308 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 BTN2A1Q7KYR7 527 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 G2E3Q7L622 706 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 NIPA2Q8N8Q9 360 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 RASGEF1AQ8N9B8 481 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 OR1L3Q8NH93 324 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 PROX1Q92786 737 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 WBP2Q969T9 261 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 AZIN2Q96A70 460 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 MAGED4Q96JG8 741 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 FER1L6-AS2Q96M78 137 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 PANK2Q9BZ23 570 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 PRRG4Q9BZD6 226 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 MTMR12Q9C0I1 747 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 CHST11Q9NPF2 352 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 GSN-AS1Q9NRJ2 163 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 KLHL8Q9P2G9 620 aaPredicted RBP3.79□□□□□ -1.8
CD44-215ENST00000525241 TXNDC16Q9P2K2 825 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 GIMAP2Q9UG22 337 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 WDR37Q9Y2I8 494 aa3.79□□□□□ -1.8
CD44-215ENST00000525241 TRAV24A0A0B4J272 114 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 H7C0S8 307 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 ZNF195O14628 629 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 EPHB6O15197 1021 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 VTNP04004 478 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 ZNF883P0CG24 379 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 LHCGRP22888 699 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 SLC6A12P48065 614 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 VEGFCP49767 419 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 ZNF41P51814 821 aaPredicted RBP3.78□□□□□ -1.8
CD44-215ENST00000525241 DLK1P80370 383 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 MZT1Q08AG7 82 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 RASGEF1BQ0VAM2 473 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 EXT1Q16394 746 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 PPP1R21Q6ZMI0 780 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 ZNF497Q6ZNH5 498 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 ERN2Q76MJ5 926 aaKnown RBP3.78□□□□□ -1.8
CD44-215ENST00000525241 PTAR1Q7Z6K3 402 aaPredicted RBP3.78□□□□□ -1.8
CD44-215ENST00000525241 RAB42Q8N4Z0 105 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 OR10G8Q8NGN5 311 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 OR2T6Q8NHC8 308 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 KCNE4Q8WWG9 221 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 C4orf45Q96LM5 186 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 SPATA33Q96N06 139 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 MAP3K3Q99759 626 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 PPANQ9NQ55 473 aaKnown RBP3.78□□□□□ -1.8
CD44-215ENST00000525241 MAN2C1Q9NTJ4 1040 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.78□□□□□ -1.8
CD44-215ENST00000525241 MAN1B1Q9UKM7 699 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 R4GN57 208 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 KAT6BQ8WYB5 2073 aa3.78□□□□□ -1.8
CD44-215ENST00000525241 TRBV5-5A0A0J9YX44 114 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 C2CD4DB7Z1M9 353 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 CCDC188H7C350 402 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 EXTL3O43909 919 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 SNX3O60493 162 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 RPS6KA5O75582 802 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 SEC24AO95486 1093 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 PENKP01210 267 aaPredicted RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 PTAFRP25105 342 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 CDC25CP30307 473 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 GSDMDP57764 484 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 IRX1P78414 480 aaPredicted RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 TRAP1Q12931 704 aaKnown RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 GPR33Q49SQ1 333 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 LACTB2Q53H82 288 aaPredicted RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 SUSD1Q6UWL2 747 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 HOGA1Q86XE5 327 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 RYBPQ8N488 228 aaPredicted RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 KLHDC1Q8N7A1 406 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 NOA1Q8NC60 698 aaKnown RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 KIF18AQ8NI77 898 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 APOBEC4Q8WW27 367 aaKnown RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 POM121L2Q96KW2 1035 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 OPRPNQ99935 248 aaPredicted RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 ZDHHC18Q9NUE0 388 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 POLLQ9UGP5 575 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 CHKBQ9Y259 395 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 EXOGQ9Y2C4 368 aaKnown RBP3.77□□□□□ -1.81
CD44-215ENST00000525241 ANGPTL3Q9Y5C1 460 aa3.77□□□□□ -1.81
CD44-215ENST00000525241 SNURFLB1AK76 121 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 CCL24O00175 119 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms