RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ACP5P13686 325 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 PRG2P13727 222 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 ATP1B2P14415 290 aaPredicted RBP11.4□□□□□ -0.58
SYNPO-204ENST00000519664 TYRP14679 529 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 HOXD12P35452 270 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 ATP12AP54707 1039 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 PIGGQ5H8A4 983 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 TPGS2Q68CL5 300 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 KBTBD6Q86V97 674 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 PDPRQ8NCN5 879 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 OR5K1Q8NHB7 308 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 TEX47Q8TBZ9 253 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 BRINP2Q9C0B6 783 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 TPT1P8Q9HAU6 139 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 TVP23BQ9NYZ1 205 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 FNIP2Q9P278 1114 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 SSR3Q9UNL2 185 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 CLDN25C9JDP6 229 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 FBP2O00757 339 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 EFCAB14O75071 495 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 ARSFP54793 590 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 EMX2Q04743 252 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 DCST1Q5T197 706 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 AGTRAPQ6RW13 159 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF730Q6ZMV8 503 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 TSPAN33Q86UF1 283 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 STON2Q8WXE9 905 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 LRCH3Q96II8 777 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 MS4A4AQ96JQ5 239 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 RPF2Q9H7B2 306 aaKnown RBP11.4□□□□□ -0.58
SYNPO-204ENST00000519664 CD320Q9NPF0 282 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 ZCCHC3Q9NUD5 404 aaKnown RBP11.4□□□□□ -0.58
SYNPO-204ENST00000519664 PLAGL1Q9UM63 463 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 NME4O00746 187 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 ADAMDEC1O15204 470 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 MMP20O60882 483 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 FYNP06241 537 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 CD36P16671 472 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 GABRB3P28472 473 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 MAGEA11P43364 429 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 ELP6Q0PNE2 266 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 KCNAB2Q13303 367 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 ZDHHC20Q5W0Z9 365 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 FAM180BQ6P0A1 224 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 POMZP3Q6PJE2 187 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 SMARCD3Q6STE5 483 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 APCDD1Q8J025 514 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 PHC3Q8NDX5 983 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 COL21A1Q96P44 957 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 SPATA5L1Q9BVQ7 753 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 RPRD1BQ9NQG5 326 aaKnown RBP11.4□□□□□ -0.58
SYNPO-204ENST00000519664 PHPT1Q9NRX4 125 aaPredicted RBP11.4□□□□□ -0.58
SYNPO-204ENST00000519664 SOHLH2Q9NX45 425 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 GULP1Q9UBP9 304 aa11.4□□□□□ -0.58
SYNPO-204ENST00000519664 PTPRZ1P23471 2315 aaPredicted RBP11.4□□□□□ -0.58
SYNPO-204ENST00000519664 SOCS2O14508 198 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 DNTTP04053 509 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 COPZ1P61923 177 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 COX10Q12887 443 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 ZBED5Q49AG3 693 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 IFI44LQ53G44 452 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 OR2T5Q6IEZ7 315 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 NIPAL1Q6NVV3 410 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 IZUMO1Q8IYV9 350 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 DCAF4L2Q8NA75 395 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 OR52L1Q8NGH7 329 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 OR2T29Q8NH02 315 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 HM13Q8TCT9 377 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 TMEM174Q8WUU8 243 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 TMEM203Q969S6 136 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 C3orf30Q96M34 536 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 C12orf66Q96MD2 445 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 KCNS3Q9BQ31 491 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 CD244Q9BZW8 370 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 MTG2Q9H4K7 406 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 GMPR2Q9P2T1 348 aaKnown RBP11.4□□□□□ -0.59
SYNPO-204ENST00000519664 TMEM98Q9Y2Y6 226 aa11.4□□□□□ -0.59
SYNPO-204ENST00000519664 HTR3EA5X5Y0 456 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 CACNB4O00305 520 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-204ENST00000519664 CASKO14936 926 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 NDUFB5O43674 189 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 POP7O75817 140 aaKnown RBP11.39□□□□□ -0.59
SYNPO-204ENST00000519664 ALPPL2P10696 532 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 TPTEP56180 551 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 CREMQ03060 361 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 ZNF829Q3KNS6 432 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-204ENST00000519664 HMGN2P46Q86SG4 172 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 THOC6Q86W42 341 aaKnown RBP11.39□□□□□ -0.59
SYNPO-204ENST00000519664 ITPKCQ96DU7 683 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 IGSF21Q96ID5 467 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 HTATIP2Q9BUP3 242 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 MRM3Q9HC36 420 aaKnown RBP11.39□□□□□ -0.59
SYNPO-204ENST00000519664 C8orf4Q9NR00 106 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 IGSF5Q9NSI5 407 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 TDP1Q9NUW8 608 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 FAIMQ9NVQ4 179 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 SH3PXD2BA1X283 911 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 DYRK3O43781 588 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 PDE9AO76083 593 aa11.39□□□□□ -0.59
SYNPO-204ENST00000519664 HLA-DQA2P01906 255 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms