RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 SNX12Q9UMY4 172 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 A0A1W2PPV9 198 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 AGPSO00116 658 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 CNOT3O75175 753 aaKnown RBP13.07□□□□□ -0.32
TCOF1-215ENST00000515516 ONECUT2O95948 504 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 UMODP07911 640 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 PGAM1P18669 254 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 MMP11P24347 488 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 GCGRP47871 477 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 OR1D4P47884 311 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 OCA2Q04671 838 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 AIMP2Q13155 320 aaKnown RBP13.07□□□□□ -0.32
TCOF1-215ENST00000515516 CUL1Q13616 776 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 MYBPC3Q14896 1274 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 NKG7Q16617 165 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 MUM1Q2TAK8 710 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 HSP90AA5PQ58FG0 334 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.07□□□□□ -0.32
TCOF1-215ENST00000515516 THEMIS2Q5TEJ8 643 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 FRMPD2BQ6IN97 320 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 RNF44Q7L0R7 432 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 PPP1R32Q7Z5V6 425 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 KCNMB4Q86W47 210 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 PALM2Q8IXS6 379 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 METTL27Q8N6F8 245 aaPredicted RBP13.07□□□□□ -0.32
TCOF1-215ENST00000515516 RERGQ96A58 199 aaPredicted RBP13.07□□□□□ -0.32
TCOF1-215ENST00000515516 CABS1Q96KC9 395 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 SIGLEC10Q96LC7 697 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 EBNA1BP2Q99848 306 aaKnown RBP13.07□□□□□ -0.32
TCOF1-215ENST00000515516 SLC26A1Q9H2B4 701 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 ZNF304Q9HCX3 659 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 ENAMQ9NRM1 1142 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 SLC22A11Q9NSA0 550 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 IARS2Q9NSE4 1012 aaKnown RBP13.07□□□□□ -0.32
TCOF1-215ENST00000515516 ABCF3Q9NUQ8 709 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 FBXO5Q9UKT4 447 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 CDC14AQ9UNH5 594 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 DHRS7Q9Y394 339 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 MAU2Q9Y6X3 613 aa13.07□□□□□ -0.32
TCOF1-215ENST00000515516 FLNBO75369 2602 aaKnown RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 LOC105369274A0A096LPK9 316 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 LOC102723532A0A0G2JNH3 316 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 OR2A25A4D2G3 310 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 PRPF4O43172 522 aaKnown RBP eCLIP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 TTC4O95801 387 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 ERGP11308 486 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 TCP1P17987 556 aaKnown RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 ITGA3P26006 1051 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 MAGEA3P43357 314 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 CARSP49589 748 aaKnown RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 FOXL2P58012 376 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 ABATP80404 500 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 PRDX1Q06830 199 aaKnown RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 RBBP7Q16576 425 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 RNASEH2BQ5TBB1 312 aaKnown RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 LRRC8EQ6NSJ5 796 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 FBXO42Q6P3S6 717 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 ADCK2Q7Z695 626 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 OR4N4Q8N0Y3 316 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 ZADH2Q8N4Q0 377 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 FAM26EQ8N5C1 309 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 FBXO15Q8NCQ5 510 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 GALNT11Q8NCW6 608 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 ASB11Q8WXH4 323 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 PNPLA2Q96AD5 504 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 GPR21Q99679 349 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 SLC30A3Q99726 388 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 PLCD4Q9BRC7 762 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 NAT9Q9BTE0 207 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 YIPF2Q9BWQ6 316 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 SOX17Q9H6I2 414 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 SEMA3GQ9NS98 782 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 ZNF282Q9UDV7 671 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 TAC3Q9UHF0 121 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 TRMT6Q9UJA5 497 aaKnown RBP13.06□□□□□ -0.32
TCOF1-215ENST00000515516 FBXL4Q9UKA2 621 aa13.06□□□□□ -0.32
TCOF1-215ENST00000515516 PABPN1LA6NDY0 278 aaKnown RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 H0YGG7 62 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SMAPO00193 183 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 EIF3FO00303 357 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 TXNDC9O14530 226 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 DNALI1O14645 258 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SORBS2O94875 1100 aaKnown RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 HAUS5O94927 633 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SLC16A8O95907 504 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 F7P08709 466 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 FBLP22087 321 aaKnown RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SKIV2L2P42285 1042 aaKnown RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 RGS4P49798 205 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 EMP3P54852 163 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 ARF3P61204 181 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 MPP1Q00013 466 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 INPP5JQ15735 1006 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SPANXN3Q5MJ09 141 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 ICE2Q659A1 982 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SLC6A19Q695T7 634 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 ZNF549Q6P9A3 640 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SHISA6Q6ZSJ9 500 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 UBE2R2Q712K3 238 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms