RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 SDCBP2Q9H190 292 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 MAP4K5Q9Y4K4 846 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 C17orf113A0A1B0GUU1 675 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 A8MXE2 369 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 GABRDO14764 452 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 RDH16O75452 317 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 SLITRK3O94933 977 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 ICAM3P32942 547 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 DPP6P42658 865 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 MC1RQ01726 317 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 TMEM62Q0P6H9 643 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 DUSP4Q13115 394 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 GK2Q14410 553 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 ANKRD22Q5VYY1 191 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 ALG1LQ6GMV1 187 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 KIAA0930Q6ICG6 404 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 C6orf89Q6UWU4 347 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 OTOP1Q7RTM1 612 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 SSX9Q7RTT3 188 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 NOXA1Q86UR1 476 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 SPATA6LQ8N4H0 392 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 GALNT11Q8NCW6 608 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 HAVCR2Q8TDQ0 301 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 NKD1Q969G9 470 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 PYURFQ96I23 114 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 OR52B2Q96RD2 323 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 NT5DC2Q9H857 520 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 HIF3AQ9Y2N7 669 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 HCN4Q9Y3Q4 1203 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 TCAF1Q9Y4C2 921 aa10.98□□□□□ -0.65
LIMCH1-208ENST00000508501 ERCC6L2Q5T890 1561 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CNTN5O94779 1100 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 RPL10P27635 214 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CAMLGP49069 296 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CDH11P55287 796 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ST3GAL3Q11203 375 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PEA15Q15121 130 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SLC25A52Q3SY17 297 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 C14orf28Q4W4Y0 310 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 TMEM41BQ5BJD5 291 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 METTL11BQ5VVY1 283 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PPP2R2DQ66LE6 453 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 AADACL2Q6P093 401 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 DOK6Q6PKX4 331 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 GSG1LQ6UXU4 331 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ZER1Q7Z7L7 766 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SKA3Q8IX90 412 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ZNF101Q8IZC7 436 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 OR8K3Q8NH51 312 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CHPT1Q8WUD6 406 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 OSTF1Q92882 214 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SLC29A3Q9BZD2 475 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ABCG5Q9H222 651 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 TIGARQ9NQ88 270 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 UFSP2Q9NUQ7 469 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 TAS2R14Q9NYV8 317 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ACTR10Q9NZ32 417 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 HACL1Q9UJ83 578 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ABT1Q9ULW3 272 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ST14Q9Y5Y6 855 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 A0A0J9YVX5 310 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 WASHC1A8K0Z3 465 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 WASH3PC4AMC7 463 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PIP5K1BO14986 540 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 TP73O15350 636 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SCAF4O95104 1147 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 MAOAP21397 527 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 RPS12P25398 132 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PITPNBP48739 271 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 DGKGP49619 791 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ACTBP60709 375 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ACTG1P63261 375 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PFKPQ01813 784 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 RAP1GAP2Q684P5 730 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 RPL13AP3Q6NVV1 102 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ANKRD54Q6NXT1 300 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 WASH2PQ6VEQ5 465 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CLIP4Q8N3C7 705 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 OR8K5Q8NH50 307 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 RAET1EQ8TD07 263 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 STK35Q8TDR2 534 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CHFRQ96EP1 664 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SLC41A3Q96GZ6 507 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 OR2M4Q96R27 311 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 KCNJ16Q9NPI9 418 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PCDHGA8Q9Y5G5 932 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 NRKQ7Z2Y5 1582 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 NPEPPSL1A6NEC2 478 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 BOLA2-SMG1P6H3BVE0 249 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SC5DO75845 299 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 MMP10P09238 476 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PTGER3P43115 390 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CDH15P55291 814 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 MRPS10P82664 201 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SCARB2Q14108 478 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 LASP1Q14847 261 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 RAB39AQ14964 217 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PTCHD3Q3KNS1 767 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 FAM174BQ3ZCQ3 159 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms