RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 ZNF285Q96NJ3 590 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 SLC46A1Q96NT5 459 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 TRAPPC9Q96Q05 1148 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 ATOH8Q96SQ7 321 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 PKP4Q99569 1192 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 NUDT22Q9BRQ3 303 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 TRMOQ9BU70 441 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 NLNQ9BYT8 704 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 PELI2Q9HAT8 420 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 MRPS30Q9NP92 439 aaKnown RBP8.16□□□□□ -1.1
PDGFC-205ENST00000506880 IGSF5Q9NSI5 407 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 SIDT1Q9NXL6 827 aaKnown RBP8.16□□□□□ -1.1
PDGFC-205ENST00000506880 GALPQ9UBC7 116 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 FAM8A1Q9UBU6 413 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 NFS1Q9Y697 457 aa8.16□□□□□ -1.1
PDGFC-205ENST00000506880 CFAP20Q9Y6A4 193 aaKnown RBP8.16□□□□□ -1.1
PDGFC-205ENST00000506880 ANKRD11Q6UB99 2663 aaPredicted RBP8.16□□□□□ -1.1
PDGFC-205ENST00000506880 URB1O60287 2271 aaKnown RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 SPTBP11277 2137 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 ADAMTS20P59510 1910 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 A0A1W2PPV9 198 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 FITM1A5D6W6 292 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 URADA6NGE7 173 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 ISM1B1AKI9 464 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 BTN3A3O00478 584 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 MAP2K7O14733 419 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 POLR1CO15160 346 aaPredicted RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TM9SF1O15321 606 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 ZSCAN9O15535 394 aaPredicted RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PRPF4O43172 522 aaKnown RBP eCLIP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 H2AFYO75367 372 aaKnown RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 STK16O75716 305 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 RASSF9O75901 435 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 ONECUT2O95948 504 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PIM1P11309 404 aaPredicted RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 H2AFXP16104 143 aaPredicted RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TYRP1P17643 537 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 POLR2CP19387 275 aaPredicted RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TFEBP19484 476 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 CCR8P51685 355 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 CFHR1Q03591 330 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 GALNT1Q10472 559 aaPredicted RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TARDBPQ13148 414 aaKnown RBP eCLIP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PRKG2Q13237 762 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 SETDB1Q15047 1291 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TSNQ15631 228 aaKnown RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 SF1Q15637 639 aaKnown RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 FAM214AQ32MH5 1076 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TECRLQ5HYJ1 363 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PHF19Q5T6S3 580 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PRAMEF13Q5VWM6 474 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 ZNF425Q6IV72 752 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 SH2D5Q6ZV89 423 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 RNF44Q7L0R7 432 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 HDXQ7Z353 690 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TRABD2AQ86V40 505 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PPP1R3BQ86XI6 285 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 GPR135Q8IZ08 494 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 GOLGA6L1Q8N7Z2 621 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 BMPERQ8N8U9 685 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 SNIP1Q8TAD8 396 aaKnown RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 ANKRD49Q8WVL7 239 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 REPS1Q96D71 796 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 GPR78Q96P69 363 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TGM7Q96PF1 710 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 SMC6Q96SB8 1091 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PLCD4Q9BRC7 762 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 EFCAB11Q9BUY7 163 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 DPH1Q9BZG8 443 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 IQCGQ9H095 443 aaKnown RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 RYDENQ9NUL5 291 aaKnown RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 SLC17A6Q9P2U8 582 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 RARRES3Q9UL19 164 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PLCL2Q9UPR0 1127 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 PLAAQ9Y263 795 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 DYRK1BQ9Y463 629 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 LOXL2Q9Y4K0 774 aa8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TMEM184BQ9Y519 407 aaPredicted RBP8.15□□□□□ -1.1
PDGFC-205ENST00000506880 TRBV23OR9-2A0A075B6M9 112 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 TRBC2A0A5B9 178 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 K7EPI3 171 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 CLGNO14967 610 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 RGS16O15492 202 aaPredicted RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 PHGDHO43175 533 aaKnown RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 MLYCDO95822 493 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 SYF2O95926 243 aaKnown RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 HOXB3P14651 431 aaPredicted RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 NPPBP16860 134 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 SAT1P21673 171 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 IL10P22301 178 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 ATP5F1P24539 256 aaPredicted RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 HNF4AP41235 474 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 GRIA3P42263 894 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 TSFMP43897 325 aaKnown RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 BDKRB1P46663 353 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 PPM1FP49593 454 aaPredicted RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 UCNP55089 124 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 ITGA1P56199 1179 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 DNAJB13P59910 316 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 TBPL1P62380 186 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms