RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 FAM171BQ6P995 826 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 RNF165Q6ZSG1 346 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 C3orf58Q8NDZ4 430 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 COL21A1Q96P44 957 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 ZYG11BQ9C0D3 744 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 AMBNQ9NP70 447 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 THUMPD1Q9NXG2 353 aaKnown RBP16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 GPLD1P80108 840 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 HMGCS1Q01581 520 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 IL10RBQ08334 325 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 C19orf48Q6RUI8 117 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 LYPD8Q6UX82 237 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 USP50Q70EL3 339 aaPredicted RBP16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 SCD5Q86SK9 330 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 ZSWIM9Q86XI8 627 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 REM2Q8IYK8 340 aaPredicted RBP16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 CADM2Q8N3J6 435 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 SLC7A6Q92536 515 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 TTC9Q92623 222 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 CEP19Q96LK0 163 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 CEP295NLQ96MC4 621 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 INPP5KQ9BT40 448 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 ZBED2Q9BTP6 218 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 C3orf14Q9HBI5 128 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 RPRD1BQ9NQG5 326 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 PATJQ8NI35 1801 aa16.63■□□□□ 0.25
SQSTM1-211ENST00000506690 SLC28A1O00337 649 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 OR1I1O60431 355 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 AOC2O75106 756 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 PRIM2P49643 509 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 CRISP3P54108 245 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 ITGA1P56199 1179 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 OLR1P78380 273 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 USP39Q53GS9 565 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 Q6ZPB1 254 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 TRIM46Q7Z4K8 759 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 OR4K2Q8NGD2 314 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 TRIB3Q96RU7 358 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 TTPALQ9BTX7 342 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 REEP1Q9H902 201 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 OTOFQ9HC10 1997 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 ASAH2Q9NR71 780 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 FARSBQ9NSD9 589 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 TMLHEQ9NVH6 421 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 PCDHB5Q9Y5E4 795 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 A0A0G2JMP0 313 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 SMIM35A0A1B0GVV1 85 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 STSP08842 583 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 GGT2P36268 569 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 PXNP49023 591 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 SLC14A1Q13336 389 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 INO80DQ53TQ3 878 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 GPR153Q6NV75 609 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 VTCN1Q7Z7D3 282 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 PIANPQ8IYJ0 282 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 CLHC1Q8NHS4 586 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 TRNT1Q96Q11 434 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 MCCC1Q96RQ3 725 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 KCNS3Q9BQ31 491 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 MROH8Q9H579 483 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 LRTM1Q9HBL6 345 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 AASDHPPTQ9NRN7 309 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 MUTYHQ9UIF7 546 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 VPS9D1Q9Y2B5 631 aa16.62■□□□□ 0.25
SQSTM1-211ENST00000506690 C9P02748 559 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 MMP3P08254 477 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 CDKN2CP42773 168 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 GPAT3Q53EU6 434 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 ARMC4Q5T2S8 1044 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 SERPINA11Q86U17 422 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 KCNJ9Q92806 393 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 GON7Q9BXV9 100 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 TRIM39Q9HCM9 518 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 RANGRFQ9HD47 186 aaPredicted RBP16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 GPR83Q9NYM4 423 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 RPS6KA6Q9UK32 745 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 V9GYH0 126 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 SLC12A8A0AV02 714 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 MOXD2PA6NHM9 499 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 PLK4O00444 970 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 DPM1O60762 260 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 BCKDHAP12694 445 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 IL7P13232 177 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 PSMA3P25788 255 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 PIK3CGP48736 1102 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 IQCCQ4KMZ1 466 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 PSAPL1Q6NUJ1 521 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 SBSNQ6UWP8 590 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 ELMOD2Q8IZ81 293 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 SPERTQ8NA61 448 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 GALNT6Q8NCL4 622 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 ANKK1Q8NFD2 765 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 PPP1R13LQ8WUF5 828 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 CRELD1Q96HD1 420 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 SERPINB11Q96P15 392 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 FYTTD1Q96QD9 318 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 NMUR1Q9HB89 426 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 SNX8Q9Y5X2 465 aa16.61■□□□□ 0.25
SQSTM1-211ENST00000506690 PTPRDP23468 1912 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms