RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	TMEM44	Q2T9K0	475 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	USP39	Q53GS9	565 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	GPR139	Q6DWJ6	353 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	LETMD1	Q6P1Q0	360 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	DEGS2	Q6QHC5	323 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	MEX3B	Q6ZN04	569 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	MSANTD1	Q6ZTZ1	278 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	FKBP9P1	Q75LS8	142 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	LHFPL3	Q86UP9	236 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	EID3	Q8N140	333 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	UBE2J2	Q8N2K1	259 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	ZSCAN1	Q8NBB4	408 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	ZNF420	Q8TAQ5	688 aa	Predicted RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CPT1B	Q92523	772 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	APOPT1	Q96IL0	206 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	C9orf72	Q96LT7	481 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CSPG4P5	Q96PW8	444 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	HHIP	Q96QV1	700 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	C1orf50	Q9BV19	199 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	LACRT	Q9GZZ8	138 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	PIGU	Q9H490	435 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	COG4	Q9H9E3	785 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	TRIM39	Q9HCM9	518 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	THUMPD1	Q9NXG2	353 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	TOR4A	Q9NXH8	423 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	MMP17	Q9ULZ9	603 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	SNX24	Q9Y343	169 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	DUSP10	Q9Y6W6	482 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	MUC6	Q6W4X9	2439 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	MUC22	E2RYF6	1773 aa	Predicted RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	MYO18A	Q92614	2054 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CACNA1I	Q9P0X4	2223 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919		A0A0A6YYK5	440 aa	Predicted RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919		A0A0D9SEW6	157 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919		A8MU76	341 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	WASH3P	C4AMC7	463 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919		K7ERQ8	282 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	AIM2	O14862	343 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CASC3	O15234	703 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	GALR2	O43603	387 aa	Predicted RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	HS6ST1	O60243	411 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	KERA	O60938	352 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	APOA1	P02647	267 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CHRM5	P08912	532 aa	Predicted RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	RHOQ	P17081	205 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	NTSR1	P30989	418 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	ARL4A	P40617	200 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	IL12RB1	P42701	662 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CTSO	P43234	321 aa	Predicted RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	PXN	P49023	591 aa	Predicted RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	PGD	P52209	483 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	ST8SIA6	P61647	398 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CSTF1	Q05048	431 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	SEMA3B	Q13214	749 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	PTPRR	Q15256	657 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	EOGT	Q5NDL2	527 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	PCDH20	Q8N6Y1	951 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	SPATA4	Q8NEY3	305 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	OR8K5	Q8NH50	307 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	SEC14L1	Q92503	715 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	FAM122A	Q96E09	287 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CCDC120	Q96HB5	630 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	ZNF285	Q96NJ3	590 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	CATSPERB	Q9H7T0	1116 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	SARS2	Q9NP81	518 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	TMEM248	Q9NWD8	314 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	GLTP	Q9NZD2	209 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	COPS3	Q9UNS2	423 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	PLA2G4C	Q9UP65	541 aa		11.29	□□□□□ -0.6
BRCA1-222	ENST00000493919	FRYL	O94915	3013 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	FGF10	O15520	208 aa	Predicted RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	HCRTR2	O43614	444 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	RAMP2	O60895	175 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	SLC22A3	O75751	556 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	RAB3D	O95716	219 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	DLD	P09622	509 aa	Known RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	HLA-E	P13747	358 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	IMPDH1	P20839	514 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	YAP1	P46937	504 aa	Known RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	STK19	P49842	368 aa	Predicted RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	GPLD1	P80108	840 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	MAT1A	Q00266	395 aa	Known RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	ITGAD	Q13349	1161 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	SLC12A1	Q13621	1099 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	DSG2	Q14126	1118 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	ZNF846	Q147U1	533 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	ATP13A4	Q4VNC1	1196 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	ARTN	Q5T4W7	220 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	HEATR6	Q6AI08	1181 aa	Known RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	UGT3A1	Q6NUS8	523 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	SYT13	Q7L8C5	426 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	RABEPK	Q7Z6M1	372 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	CACUL1	Q86Y37	369 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	PSTK	Q8IV42	348 aa	Known RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	ULK2	Q8IYT8	1036 aa		11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	NKAP	Q8N5F7	415 aa	Known RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	RTL3	Q8N8U3	475 aa	Known RBP	11.28	□□□□□ -0.6
BRCA1-222	ENST00000493919	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.28	□□□□□ -0.6

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