RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 FRG2Q64ET8 278 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 CPSF7Q8N684 471 aaKnown RBP20.91■□□□□ 0.94
SMC4-221ENST00000489573 SELENOMQ8WWX9 145 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 MARK4Q96L34 752 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 FRG2BQ96QU4 278 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 EFCAB11Q9BUY7 163 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 FARSBQ9NSD9 589 aaKnown RBP20.91■□□□□ 0.94
SMC4-221ENST00000489573 POT1Q9NUX5 634 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 GIMAP2Q9UG22 337 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 SLC12A4Q9UP95 1085 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 CAPN7Q9Y6W3 813 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 FANCMQ8IYD8 2048 aa20.91■□□□□ 0.94
SMC4-221ENST00000489573 A0A1B0GTW7 788 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 H0YIV9 168 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 RGS14O43566 566 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 VIPP01282 170 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 C1GALT1C1LP0DN25 315 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 HNRNPKP61978 463 aaKnown RBP eCLIP20.9■□□□□ 0.945e-13■■■■■ 46
SMC4-221ENST00000489573 PLK5Q496M5 336 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 CATSPEREQ5SY80 951 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 OGFOD2Q6N063 350 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 NXPE4Q6UWF7 544 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 Q6ZSR9 355 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 TRIM46Q7Z4K8 759 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 GKN2Q86XP6 184 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 TREML1Q86YW5 311 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 FAM46DQ8NEK8 389 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 LMX1AQ8TE12 382 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 ZFPM2Q8WW38 1151 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 LCN9Q8WX39 176 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 TUBB6Q9BUF5 446 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 ACAT2Q9BWD1 397 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 TXLNGQ9NUQ3 528 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 MRGBPQ9NV56 204 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 ARL8BQ9NVJ2 186 aa20.9■□□□□ 0.94
SMC4-221ENST00000489573 COPG1Q9Y678 874 aaKnown RBP20.9■□□□□ 0.94
SMC4-221ENST00000489573 PEX11AO75192 247 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 CBX6O95503 412 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 PDYNP01213 254 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 CDH1P12830 882 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 GNSP15586 552 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 UBE2IP63279 158 aaKnown RBP20.89■□□□□ 0.94
SMC4-221ENST00000489573 ZNF33BQ06732 778 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 NR6A1Q15406 480 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 ATP6AP1LQ52LC2 224 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 PAGE2BQ5JRK9 111 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 AMIGO1Q86WK6 493 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 C17orf64Q86WR6 236 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 NAGSQ8N159 534 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 SFRP1Q8N474 314 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 FBXL6Q8N531 539 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 SLC37A2Q8TED4 501 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 ZDHHC1Q8WTX9 485 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 PATE1Q8WXA2 126 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 SLC40A1Q9NP59 571 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 OR6C2Q9NZP2 312 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 CPNE7Q9UBL6 633 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 PCDHB11Q9Y5F2 797 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 THADAQ6YHU6 1953 aa20.89■□□□□ 0.94
SMC4-221ENST00000489573 A0A1B0GVT2 93 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 SERTM1A2A2V5 107 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 SLC22A2O15244 555 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 ALDOCP09972 364 aaKnown RBP20.89■□□□□ 0.93
SMC4-221ENST00000489573 PSMB5P28074 263 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 ADSLP30566 484 aaPredicted RBP20.89■□□□□ 0.93
SMC4-221ENST00000489573 KLF10Q13118 480 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 LAPTM5Q13571 262 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 SLBPQ14493 270 aaKnown RBP eCLIP20.89■□□□□ 0.93
SMC4-221ENST00000489573 SQLEQ14534 574 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 IMPG1Q17R60 797 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 SPATA19Q7Z5L4 167 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 JPH3Q8WXH2 748 aaPredicted RBP20.89■□□□□ 0.93
SMC4-221ENST00000489573 MTFMTQ96DP5 389 aaKnown RBP20.89■□□□□ 0.93
SMC4-221ENST00000489573 PPP3R2Q96LZ3 170 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 PELI2Q9HAT8 420 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 SUSD2Q9UGT4 822 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 DOLKQ9UPQ8 538 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 CCL27Q9Y4X3 112 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 PCDHGA11Q9Y5H2 935 aa20.89■□□□□ 0.93
SMC4-221ENST00000489573 LSM1O15116 133 aaKnown RBP20.88■□□□□ 0.93
SMC4-221ENST00000489573 HRO43593 1189 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 ATP5HO75947 161 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 UNC5CO95185 931 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 ATP4BP51164 291 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 NEK2P51955 445 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 ICE2Q659A1 982 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 MED27Q6P2C8 311 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 ZNF548Q8NEK5 533 aaPredicted RBP20.88■□□□□ 0.93
SMC4-221ENST00000489573 OR4E2Q8NGC2 313 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 WDR20Q8TBZ3 569 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 NELL1Q92832 810 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 REPS1Q96D71 796 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 NSL1Q96IY1 281 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 SRMSQ9H3Y6 488 aa20.88■□□□□ 0.93
SMC4-221ENST00000489573 GEMIN8Q9NWZ8 242 aaKnown RBP20.88■□□□□ 0.93
SMC4-221ENST00000489573 PIPSLA2A3N6 862 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 B4DGG1 531 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 AQP9O43315 295 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 GPR37L1O60883 481 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 T-ENOLP0DO92 83 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms