RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 C6orf183Q5T699 404 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 UTS2BQ765I0 119 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 PARP8Q8N3A8 854 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 PEX13Q92968 403 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 NSUN5Q96P11 429 aaKnown RBP10.75□□□□□ -0.69
HDAC6-228ENST00000486227 GTPBP2Q9BX10 602 aaKnown RBP10.75□□□□□ -0.69
HDAC6-228ENST00000486227 CLEC4MQ9H2X3 399 aaPredicted RBP10.75□□□□□ -0.69
HDAC6-228ENST00000486227 KCNK13Q9HB14 408 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 HEBP2Q9Y5Z4 205 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 TOR1BO14657 336 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 MTHFD1P11586 935 aaKnown RBP10.75□□□□□ -0.69
HDAC6-228ENST00000486227 CDKN2DP55273 166 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 CDC42P60953 191 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 LAPTM5Q13571 262 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 FAAH2Q6GMR7 532 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 TMEM214Q6NUQ4 689 aaKnown RBP10.75□□□□□ -0.69
HDAC6-228ENST00000486227 ZNF544Q6NX49 715 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 KLHL17Q6TDP4 642 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 SORCS1Q8WY21 1168 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 SMARCD2Q92925 531 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 ZNF607Q96SK3 696 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 KAT8Q9H7Z6 458 aaKnown RBP10.75□□□□□ -0.69
HDAC6-228ENST00000486227 DHRS7Q9Y394 339 aa10.75□□□□□ -0.69
HDAC6-228ENST00000486227 CFAP20Q9Y6A4 193 aaKnown RBP10.75□□□□□ -0.69
HDAC6-228ENST00000486227 ZNF99A8MXY4 864 aaPredicted RBP10.74□□□□□ -0.69
HDAC6-228ENST00000486227 ADAM12O43184 909 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 FADS2O95864 444 aaKnown RBP10.74□□□□□ -0.69
HDAC6-228ENST00000486227 FYNP06241 537 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 PRSS56P0CW18 603 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 CTSAP10619 480 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 MAGP20916 626 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 PAICSP22234 425 aaKnown RBP10.74□□□□□ -0.69
HDAC6-228ENST00000486227 DNAJB13P59910 316 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 OLR1P78380 273 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 STX4Q12846 297 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 SIM2Q14190 667 aaPredicted RBP10.74□□□□□ -0.69
HDAC6-228ENST00000486227 QPRTQ15274 297 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 WDR45BQ5MNZ6 344 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 OGFOD2Q6N063 350 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 MZT2BQ6NZ67 158 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 ERICH5Q6P6B1 374 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 GALNT5Q7Z7M9 940 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 ARHGAP12Q8IWW6 846 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 ALDH16A1Q8IZ83 802 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 C11orf65Q8NCR3 313 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 GRPEL2Q8TAA5 225 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 FAR1Q8WVX9 515 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 LRRC58Q96CX6 371 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 MRPL48Q96GC5 212 aaKnown RBP10.74□□□□□ -0.69
HDAC6-228ENST00000486227 LMLNQ96KR4 655 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 CCM2Q9BSQ5 444 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 SRMSQ9H3Y6 488 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 MAFFQ9ULX9 164 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 GTF2A1LQ9UNN4 478 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 A0A0G2JN53 185 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 LRRC14BA6NHZ5 514 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 MAGEB17A8MXT2 336 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 MAN2B1O00754 1011 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 CD97P48960 835 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 HNMTP50135 292 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 UFM1P61960 85 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 SLBPQ14493 270 aaKnown RBP eCLIP10.74□□□□□ -0.69
HDAC6-228ENST00000486227 PPP1R3AQ16821 1122 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 FRG2Q64ET8 278 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 FRG2BQ96QU4 278 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 MARCH7Q9H992 704 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 POLR1DQ9Y2S0 133 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 LOC110117498-PIK3R3F6TDL0 507 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 AURKAO14965 403 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 MAGEB3O15480 346 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 TSPAN9O75954 239 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 TGFB1P01137 390 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 CD1DP15813 335 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 TALDO1P37837 337 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 PREPP48147 710 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 TMBIM6P55061 237 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 DEFB103AP81534 67 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 SRSF11Q05519 484 aaKnown RBP10.74□□□□□ -0.69
HDAC6-228ENST00000486227 CYP4F3Q08477 520 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 DAG1Q14118 895 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 ZNF773Q6PK81 442 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 RAB43Q86YS6 212 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 DEPDC4Q8N2C3 294 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 SVOPLQ8N434 492 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 SLC43A3Q8NBI5 491 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 TRPV3Q8NET8 790 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 VANGL1Q8TAA9 524 aaPredicted RBP10.74□□□□□ -0.69
HDAC6-228ENST00000486227 NSMCE3Q96MG7 304 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 RANBP9Q96S59 729 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 SGIP1Q9BQI5 828 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 HERC2P3Q9BVR0 1158 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 RETREG1Q9H6L5 497 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 C3orf14Q9HBI5 128 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 VPS29Q9UBQ0 182 aa10.74□□□□□ -0.69
HDAC6-228ENST00000486227 SCELO95171 688 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 NTHL1P78549 312 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 BIKQ13323 160 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 KLHL12Q53G59 568 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 ZNF789Q5FWF6 425 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 PHOSPHO2Q8TCD6 241 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms