RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	TRIM54	Q9BYV2	358 aa		11.07	□□□□□ -0.64
CPNE1-222	ENST00000473373	RAB17	Q9H0T7	212 aa		11.07	□□□□□ -0.64
CPNE1-222	ENST00000473373	STARD5	Q9NSY2	213 aa		11.07	□□□□□ -0.64
CPNE1-222	ENST00000473373	TCFL5	Q9UL49	500 aa		11.07	□□□□□ -0.64
CPNE1-222	ENST00000473373	PTRH2	Q9Y3E5	179 aa	Known RBP	11.07	□□□□□ -0.64
CPNE1-222	ENST00000473373	KCNMB2	Q9Y691	235 aa		11.07	□□□□□ -0.64
CPNE1-222	ENST00000473373	NAV2	Q8IVL1	2488 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373		A0A1B0GX78	115 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	FAM187A	A6NFU0	413 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	TARM1	B6A8C7	271 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	PEX12	O00623	359 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	FURIN	P09958	794 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	RORA	P35398	523 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	RPL21	P46778	160 aa	Known RBP	11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	CCL11	P51671	97 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	ETF1	P62495	437 aa	Known RBP	11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	CHAF1B	Q13112	559 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	IL10RA	Q13651	578 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	GRB7	Q14451	532 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	GBX1	Q14549	363 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	ARHGAP19	Q14CB8	494 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	FAM214A	Q32MH5	1076 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	LCN10	Q6JVE6	187 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	FAM45BP	Q6NSW5	357 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	RHBDD2	Q6NTF9	364 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	ZNF549	Q6P9A3	640 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	ATG14	Q6ZNE5	492 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	CCDC25	Q86WR0	208 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	METTL27	Q8N6F8	245 aa	Predicted RBP	11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	SPATA4	Q8NEY3	305 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	GIMAP7	Q8NHV1	300 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	FLVCR1-AS1	Q8TAF5	88 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	FAM45A	Q8TCE6	357 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	PYROXD1	Q8WU10	500 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	CDKL2	Q92772	493 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	ABHD17A	Q96GS6	310 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	CABS1	Q96KC9	395 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	C16orf45	Q96MC5	204 aa	Predicted RBP	11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	DHRS4	Q9BTZ2	278 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	MENT	Q9BUN1	341 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	CHRNA10	Q9GZZ6	450 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	PRM3	Q9NNZ6	103 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	CCDC177	Q9NQR7	707 aa	Predicted RBP	11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	CUTC	Q9NTM9	273 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	KLHL42	Q9P2K6	505 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	SLC17A6	Q9P2U8	582 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	TUBD1	Q9UJT1	453 aa		11.06	□□□□□ -0.64
CPNE1-222	ENST00000473373	MYO1C	O00159	1063 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	EIF3F	O00303	357 aa	Predicted RBP	11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	RAD51C	O43502	376 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	HCRTR1	O43613	425 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	URI1	O94763	535 aa	Predicted RBP	11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	SLC16A8	O95907	504 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	C8G	P07360	202 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	IVD	P26440	423 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	PMS2	P54278	862 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	RRAD	P55042	308 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	IL2	P60568	153 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	SRSF1	Q07955	248 aa	Known RBP eCLIP	11.05	□□□□□ -0.64	3e-6	■□□□□ 9.1
CPNE1-222	ENST00000473373	MGAT5	Q09328	741 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	CYP2A13	Q16696	494 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	NKAIN1	Q4KMZ8	207 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	COLEC12	Q5KU26	742 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	WASHC2D	Q5SRD0	308 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	RBM20	Q5T481	1227 aa	Known RBP	11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	TEDDM1	Q5T9Z0	273 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	FAM69B	Q5VUD6	431 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	ICE2	Q659A1	982 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	FCRL6	Q6DN72	434 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	PAQR3	Q6TCH7	311 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	FAM198B	Q6UWH4	519 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	IGDCC3	Q8IVU1	814 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	TEX19	Q8NA77	164 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	HMGCLL1	Q8TB92	370 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	EEF1AKMT1	Q8WVE0	214 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	ZFYVE21	Q9BQ24	234 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	SLC25A23	Q9BV35	468 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	SAYSD1	Q9NPB0	183 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	NSMCE4A	Q9NXX6	385 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	TLK1	Q9UKI8	766 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	CORO1C	Q9ULV4	474 aa	Predicted RBP	11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373	TP53TG5	Q9Y2B4	290 aa		11.05	□□□□□ -0.64
CPNE1-222	ENST00000473373		A6NL46	340 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	TERT	O14746	1132 aa	Known RBP	11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	DSCR3	O14972	297 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	SRPX2	O60687	465 aa	Predicted RBP	11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	DNAJB5	O75953	348 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	RECK	O95980	971 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	AHSG	P02765	367 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	UQCRH	P07919	91 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	ANXA5	P08758	320 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	GRK3	P35626	688 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	SP140	Q13342	867 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	MUM1	Q2TAK8	710 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	HECTD2	Q5U5R9	776 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	YOD1	Q5VVQ6	348 aa	Predicted RBP	11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	PRAMEF13	Q5VWM6	474 aa		11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	TRMT10B	Q6PF06	316 aa	Known RBP	11.04	□□□□□ -0.64
CPNE1-222	ENST00000473373	FRA10AC1	Q70Z53	315 aa		11.04	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms