RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 FEM1CQ96JP0 617 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM84AQ96KN4 292 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 FER1L6-AS2Q96M78 137 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 OLFM1Q99784 485 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 FAM118BQ9BPY3 351 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PDCD2LQ9BRP1 358 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC19A3Q9BZV2 496 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PIGUQ9H490 435 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PRDM13Q9H4Q3 707 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SLAMF7Q9NQ25 335 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 NDE1Q9NXR1 346 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CYP39A1Q9NYL5 469 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC12A4Q9UP95 1085 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 HTTP42858 3142 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ARAP2Q8WZ64 1704 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CENPFP49454 3210 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A0A6YYK5 440 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A0B4J293 547 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SMIM23A6NLE4 172 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF729A6NN14 1252 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 C12orf71A8MTZ7 269 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 FOXE1O00358 373 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PLK4O00444 970 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 WNT10BO00744 389 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ITGB1BP1O14713 200 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ACOX3O15254 700 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 DHX15O43143 795 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 LRRTM2O43300 516 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 COCHO43405 550 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 MGAMO43451 1857 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CLUHO75153 1309 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PEX11BO96011 259 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PGK1P00558 417 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 LDLRP01130 860 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CRYABP02511 175 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 MT-ND5P03915 603 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 LCKP06239 509 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 GSTA1P08263 222 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 TNNI1P19237 187 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CD1BP29016 333 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CD40LGP29965 261 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CDKN2CP42773 168 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ALDH3B2P48448 385 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 POLGP54098 1239 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 STX1BP61266 288 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 FLI1Q01543 452 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 MEF2AQ02078 507 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 TRIP13Q15645 432 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 GSTA3Q16772 222 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 WDR72Q3MJ13 1102 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 BEX5Q5H9J7 111 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PHF19Q5T6S3 580 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 OR5M10Q6IEU7 315 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 MSANTD2Q6P1R3 559 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 FRA10AC1Q70Z53 315 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 NDUFAF7Q7L592 441 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 GSTA5Q7RTV2 222 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 LHFPL3Q86UP9 236 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 IQCHQ86VS3 1027 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC13A5Q86YT5 568 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CNGA4Q8IV77 575 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ARHGEF19Q8IW93 802 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CUL9Q8IWT3 2517 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SELENOHQ8IZQ5 122 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 RIBC1Q8N443 379 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 UBL4BQ8N7F7 174 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 C12orf29Q8N999 325 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CPT1CQ8TCG5 803 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CA5BP1Q8WTZ4 195 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 HOXB13Q92826 284 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 RNF31Q96EP0 1072 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PTCD3Q96EY7 689 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 LINGO1Q96FE5 620 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 PDXPQ96GD0 296 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF285Q96NJ3 590 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 CASD1Q96PB1 797 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ABHD1Q96SE0 405 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 FOXB1Q99853 325 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 SOX7Q9BT81 388 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 METTL9Q9H1A3 318 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 C11orf49Q9H6J7 331 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 LRRC40Q9H9A6 602 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 LRRC4CQ9HCJ2 640 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 TMEM160Q9NX00 188 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 FTSJ1Q9UET6 329 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 ADAMTS5Q9UNA0 930 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 AAR2Q9Y312 384 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 AP4B1Q9Y6B7 739 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 MAU2Q9Y6X3 613 aa4.68□□□□□ -1.66
CCDC88A-209ENST00000456975 COL1A1P02452 1464 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 SALL1Q9NSC2 1324 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A087WZ62 844 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 A0A1B0GV90 55 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 GNG14A0A1W2PPG7 69 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 EFCAB7A8K855 629 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 GABRR3A8MPY1 467 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 LCE2BO14633 110 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 TSPAN4O14817 238 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 RPP14O95059 124 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 DEXIO95424 95 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms