RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 RAB10P61026 200 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 GNGT1P63211 74 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 ERV3-1Q14264 604 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 PLEKHS1Q5SXH7 462 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 PRAMEF17Q5VTA0 474 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 ADGRF3Q8IZF5 1079 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 CT55Q8WUE5 264 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 ASZ1Q8WWH4 475 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 ZNF501Q96CX3 271 aaPredicted RBP16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 GPR21Q99679 349 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 CNOT10Q9H9A5 744 aaKnown RBP16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 LHX9Q9NQ69 397 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 C1GALT1Q9NS00 363 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 EURLQ9NYK6 297 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 ACTR10Q9NZ32 417 aa16.46■□□□□ 0.23
PRPF40A-204ENST00000450303 A0A087X1B8 175 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 TERTO14746 1132 aaKnown RBP16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 SCRG1O75711 98 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 FURINP09958 794 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 TPBGLP0DKB5 382 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 RGS4P49798 205 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 POLE2P56282 527 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 HSPA14Q0VDF9 509 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 DNASE1L3Q13609 305 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 ZSCAN26Q16670 478 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 LRRC8EQ6NSJ5 796 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 TRIM73Q86UV7 250 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 BPHLQ86WA6 291 aaPredicted RBP16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 TMEM126BQ8IUX1 230 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 VRK3Q8IV63 474 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 NKAPQ8N5F7 415 aaKnown RBP16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 ZBTB2Q8N680 514 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 ACMSDQ8TDX5 336 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 PGM2Q96G03 612 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 TSNARE1Q96NA8 513 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 CATSPER2Q96P56 530 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 FCRL4Q96PJ5 515 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 FAM117AQ9C073 453 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 GPAMQ9HCL2 828 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 SNX15Q9NRS6 342 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 GEMIN8Q9NWZ8 242 aaKnown RBP16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 SENP1Q9P0U3 644 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 BTRCQ9Y297 605 aa16.45■□□□□ 0.22
PRPF40A-204ENST00000450303 HMX2A2RU54 273 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 C2orf74A8MZ97 194 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 EIF3FO00303 357 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 MATN2O00339 956 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 SLC28A2O43868 658 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 CBSLP0DN79 551 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 AOAHP28039 575 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 CBSP35520 551 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 CLCN7P51798 805 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 CDKN2DP55273 166 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 MC1RQ01726 317 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 ABRQ12979 859 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 ZKSCAN8Q15776 578 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 PRICKLE2Q7Z3G6 844 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 TBC1D1Q86TI0 1168 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 TBC1D21Q8IYX1 336 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 CARFQ8N187 725 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 LMNTD1Q8N9Z9 388 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 SLC38A9Q8NBW4 561 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 CFAP61Q8NHU2 1237 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 ISL2Q96A47 359 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 FAM136AQ96C01 138 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 TRAPPC9Q96Q05 1148 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 OLFM1Q99784 485 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 CAB39LQ9H9S4 337 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 STARD5Q9NSY2 213 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 SPHK1Q9NYA1 384 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 CIDEBQ9UHD4 219 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 ACOT9Q9Y305 439 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 PCDHB3Q9Y5E6 796 aa16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 HEMK1Q9Y5R4 338 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-204ENST00000450303 HELZ2Q9BYK8 2649 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 A0A096LPK6 155 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 PIPSLA2A3N6 862 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 CDC14CA4D256 554 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 TMEM150CB9EJG8 249 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 SFTPCP11686 197 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 ENO3P13929 434 aaPredicted RBP16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 SLC26A3P40879 764 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 IL2P60568 153 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 RPS18P62269 152 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 PPP2R2AP63151 447 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 KCNAB2Q13303 367 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 CMC1Q7Z7K0 106 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 PTRH1Q86Y79 214 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 CYP4X1Q8N118 509 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 OR1L3Q8NH93 324 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 CD200R1Q8TD46 325 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 MR1Q95460 341 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 PITPNM3Q9BZ71 974 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 TWSG1Q9GZX9 223 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 SLC25A18Q9H1K4 315 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 VPS11Q9H270 941 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 POLG2Q9UHN1 485 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 KCND3Q9UK17 655 aa16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 NOVA2Q9UNW9 492 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-204ENST00000450303 CDYLQ9Y232 598 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms