RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 GPR22Q99680 433 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 OLFM1Q99784 485 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 CCDC77Q9BR77 488 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 MCMBPQ9BTE3 642 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 SLC12A9Q9BXP2 914 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 GPR87Q9BY21 358 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 PCBD2Q9H0N5 130 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 GPAMQ9HCL2 828 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 FAM60AQ9NP50 221 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 CCDC177Q9NQR7 707 aaPredicted RBP15.74■□□□□ 0.11
SF3A1-204ENST00000447376 EURLQ9NYK6 297 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 TAC3Q9UHF0 121 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 KLHL20Q9Y2M5 609 aa15.74■□□□□ 0.11
SF3A1-204ENST00000447376 MTO1Q9Y2Z2 717 aaKnown RBP15.74■□□□□ 0.11
SF3A1-204ENST00000447376 ZFHX4Q86UP3 3567 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 KRT87PA6NCN2 255 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 MEN1O00255 615 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 RIPK2O43353 540 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 ZNF749O43361 778 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 PRICKLE3O43900 615 aaPredicted RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 ITGB2P05107 769 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 CD63P08962 238 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 ZNF37AP17032 561 aaPredicted RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 GRIA3P42263 894 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 MSH2P43246 934 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 SERPINB9P50453 376 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 ARSFP54793 590 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 TAS2R39P59534 338 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 TIAL1Q01085 375 aaKnown RBP eCLIP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 SRSF6Q13247 344 aaKnown RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 FASTKQ14296 549 aaKnown RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 EFTUD2Q15029 972 aaKnown RBP eCLIP15.73■□□□□ 0.118e-7■■■■□ 19.8
SF3A1-204ENST00000447376 KIAA1614Q5VZ46 1190 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 ICE2Q659A1 982 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 WDR93Q6P2C0 686 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 FRA10AC1Q70Z53 315 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 ADCK2Q7Z695 626 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 MCATQ8IVS2 390 aaKnown RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 FAM20CQ8IXL6 584 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 GSPT2Q8IYD1 628 aaKnown RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 MRRFQ96E11 262 aaKnown RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 MED8Q96G25 268 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 PDLIM5Q96HC4 596 aaKnown RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 SELENOSQ9BQE4 189 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 DPH7Q9BTV6 452 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 ARL15Q9NXU5 204 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 GPN3Q9UHW5 284 aaPredicted RBP15.73■□□□□ 0.11
SF3A1-204ENST00000447376 SNX7Q9UNH6 387 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 PDE10AQ9Y233 779 aa15.73■□□□□ 0.11
SF3A1-204ENST00000447376 EXOC1LA0A1B0GW35 172 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 E7ENX8 843 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 SRPX2O60687 465 aaPredicted RBP15.72■□□□□ 0.11
SF3A1-204ENST00000447376 KRT38O76015 456 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 HRH2P25021 359 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 CNTFP26441 200 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 RAB10P61026 200 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 TAP2Q03519 686 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 PRDX1Q06830 199 aaKnown RBP15.72■□□□□ 0.11
SF3A1-204ENST00000447376 GRM7Q14831 915 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 ERCC6LQ2NKX8 1250 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 LGSNQ5TDP6 509 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 FCRL6Q6DN72 434 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 C16orf46Q6P387 395 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 CCDC91Q7Z6B0 441 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 DSELQ8IZU8 1212 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 ZNF655Q8N720 491 aaPredicted RBP15.72■□□□□ 0.11
SF3A1-204ENST00000447376 PPFIBP2Q8ND30 876 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 LSM14AQ8ND56 463 aaKnown RBP15.72■□□□□ 0.11
SF3A1-204ENST00000447376 PROKR1Q8TCW9 393 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 CT55Q8WUE5 264 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 ANKRD7Q92527 254 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 ZFYVE21Q9BQ24 234 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 TXLNGYQ9BZA5 131 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 STOX2Q9P2F5 926 aaPredicted RBP15.72■□□□□ 0.11
SF3A1-204ENST00000447376 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.72■□□□□ 0.11
SF3A1-204ENST00000447376 ADAMTS6Q9UKP5 1117 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 PADI2Q9Y2J8 665 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 PCDHGA6Q9Y5G7 932 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 KLK4Q9Y5K2 254 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 V9GYY5 206 aaPredicted RBP15.72■□□□□ 0.11
SF3A1-204ENST00000447376 ITPR1Q14643 2758 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 PTPRQQ9UMZ3 2332 aa15.72■□□□□ 0.11
SF3A1-204ENST00000447376 A0A1W2PPV9 198 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 POC1B-GALNT4F8VUJ3 575 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 FAM155BO75949 473 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 MYBL2P10244 700 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 PRKAR1AP10644 381 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 PIM1P11309 404 aaPredicted RBP15.71■□□□□ 0.11
SF3A1-204ENST00000447376 IMPA1P29218 277 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 CRABP2P29373 138 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 TBPL1P62380 186 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 VSNL1P62760 191 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 CDC20Q12834 499 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 GPS2Q13227 327 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 FAM214AQ32MH5 1076 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 CRTC2Q53ET0 693 aaPredicted RBP15.71■□□□□ 0.11
SF3A1-204ENST00000447376 YOD1Q5VVQ6 348 aaPredicted RBP15.71■□□□□ 0.11
SF3A1-204ENST00000447376 PRAMEF13Q5VWM6 474 aa15.71■□□□□ 0.11
SF3A1-204ENST00000447376 CAPN13Q6MZZ7 669 aaPredicted RBP15.71■□□□□ 0.11
SF3A1-204ENST00000447376 RHBDD2Q6NTF9 364 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms