RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 MATN4O95460 622 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 OTCP00480 354 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 SERPIND1P05546 499 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 FAM163BP0C2L3 166 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 LAMP1P11279 417 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 GADD45AP24522 165 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 HNF1BP35680 557 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CLK3P49761 638 aaKnown RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 RPL26P61254 145 aaKnown RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 RPS14P62263 151 aaKnown RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 STARD3Q14849 445 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 LEXMQ3ZCV2 418 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 PARP15Q460N3 678 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 TTC23Q5W5X9 447 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 RIMKLAQ8IXN7 391 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 HSH2DQ96JZ2 352 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 OSBPL10Q9BXB5 764 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ADGRE3Q9BY15 652 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 MRM3Q9HC36 420 aaKnown RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 SPASTQ9UBP0 616 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 TEKT2Q9UIF3 430 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 PADI4Q9UM07 663 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ERVK-11Q9UQG0 969 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ERGIC3Q9Y282 383 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CARD8Q9Y2G2 431 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 M0QZQ0 153 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 MANBAO00462 879 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 STK16O75716 305 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 PORP16435 677 aaPredicted RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 HTR1EP28566 365 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 SSTR4P31391 388 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 KRT20P35900 424 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CSNK1DP48730 415 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CLCN7P51798 805 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CHIT1Q13231 466 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ATP13A5Q4VNC0 1218 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 XKR7Q5GH72 579 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 C1QTNF12Q5T7M4 302 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 UBE2UQ5VVX9 321 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CST9Q5W186 159 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 AFMIDQ63HM1 303 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 FUT10Q6P4F1 479 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ZSWIM9Q86XI8 627 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CMTM8Q8IZV2 173 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CELF2-AS1Q8N7Q2 184 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 GPR26Q8NDV2 337 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ASPSCR1Q9BZE9 553 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 C11orf16Q9NQ32 467 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 IL37Q9NZH6 218 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 DNMT3LQ9UJW3 386 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 C3orf18Q9UK00 162 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 PMF1-BGLAPU3KQ54 211 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 WDR90Q96KV7 1748 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 FAM155AB1AL88 458 aaPredicted RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 YY2O15391 372 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 STC2O76061 302 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 RRM2P31350 389 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 LIPAP38571 399 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 SERPINB10P48595 397 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 POLD2P49005 469 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 CLCA4Q14CN2 919 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 TRIM60Q495X7 471 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 XKR6Q5GH73 641 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ZNF362Q5T0B9 420 aaPredicted RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 USP50Q70EL3 339 aaPredicted RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 CROCCP3Q8IVE0 287 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ADHFE1Q8IWW8 467 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 RBM12BQ8IXT5 1001 aaKnown RBP8.41□□□□□ -1.06
USP40-203ENST00000427112 RHEBL1Q8TAI7 183 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 RAB2BQ8WUD1 216 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 RHBDF1Q96CC6 855 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 PSKH2Q96QS6 385 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 SGIP1Q9BQI5 828 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 ABCB9Q9NP78 766 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 C1orf109Q9NX04 203 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 PLAGL1Q9UM63 463 aa8.41□□□□□ -1.06
USP40-203ENST00000427112 NPIPB15A6NHN6 443 aaPredicted RBP8.4□□□□□ -1.06
USP40-203ENST00000427112 EFCAB9A8MZ26 197 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 EVPLLA8MZ36 301 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 CLIC1O00299 241 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 CBFA2T3O75081 653 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 CSF2P04141 144 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 CKBP12277 381 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 ZNF7P17097 686 aaPredicted RBP8.4□□□□□ -1.06
USP40-203ENST00000427112 BPIP17213 487 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 NAT1P18440 290 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 TYMPP19971 482 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 SERPINB1P30740 379 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 GRK5P34947 590 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 PSMD8P48556 350 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 ALDH9A1P49189 494 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 RGS4P49798 205 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 ISL1P61371 349 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 RPP38P78345 283 aaKnown RBP8.4□□□□□ -1.06
USP40-203ENST00000427112 NAE1Q13564 534 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 SKIV2LQ15477 1246 aaKnown RBP8.4□□□□□ -1.06
USP40-203ENST00000427112 ZXDCQ2QGD7 858 aaPredicted RBP8.4□□□□□ -1.06
USP40-203ENST00000427112 MORN1Q5T089 497 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 HACD2Q6Y1H2 254 aa8.4□□□□□ -1.06
USP40-203ENST00000427112 PROSER1Q86XN7 944 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms